"Variable / Field Name","Form Name","Section Header","Field Type","Field Label","Choices, Calculations, OR Slider Labels","Field Note","Text Validation Type OR Show Slider Number","Text Validation Min","Text Validation Max",Identifier?,"Branching Logic (Show field only if...)","Required Field?","Custom Alignment","Question Number (surveys only)","Matrix Group Name","Matrix Ranking?","Field Annotation"
responseidtext,hai_standardized_variable_list_outbreak_only,,text,"Response ID",,"After creating a new form, please edit the Response ID so that it matches the assigned ID in the Access Response Tracking & Epi-Aid Database",,,,,,,,,,," @hidden"
date_of_entry,hai_standardized_variable_list_outbreak_only,"
Outbreak-level Information
",text,"Date of entry",,,date_mdy,,,,,,,,,,
name_of_person_entering_re,hai_standardized_variable_list_outbreak_only,,text,"Name of person entering report",,,,,,,,,,,,,
reported_to,hai_standardized_variable_list_outbreak_only,,dropdown,"Reported to ","1, State | 2, Local | 3, Territorial | 4, Tribal | 5, CDC",,,,,,,,,,,,
date_of_report_outbreak,hai_standardized_variable_list_outbreak_only,,text,"Date reported",,,date_dmy,,,,[date_of_report_outbreak]<0,,,,,,
pathogen_1,hai_standardized_variable_list_outbreak_only,,dropdown,"Pathogen 1:","1, Acanthamoeba keratitis | 2, Acanthamoeba spp. | 3, Achromobacter xylosoxidans | 4, Achromobacter spp. | 5, Acidaminococcus fermentans | 6, Acidaminococcus spp. | 7, Acidovorax delafieldii | 8, Acidovorax spp. | 9, Acinetobacter baumannii | 10, Acinetobacter calcoaceticus | 11, Acinetobacter genospecies 3 | 12, Acinetobacter guillouiae | 13, Acinetobacter haemolyticus | 14, Acinetobacter johnsonii | 15, Acinetobacter junii | 16, Acinetobacter lwoffii | 17, Acinetobacter pittii | 18, Acinetobacter proteolyticus | 19, Acinetobacter radioreisistens | 20, Acinetobacter spp. | 21, Actinobacillus actinomycetemcomitans | 22, Actinobacillus equuli | 23, Actinobacillus lignieresii | 24, Actinobacillus suis | 25, Actinobacillus ureae | 26, Actinobacillus spp. | 27, Actinomyces bovis | 28, Actinomyces georgiae | 29, Actinomyces gerencseriae | 30, Actinomyces israelii | 31, Actinomyces meyeri | 32, Actinomyces naeslundii | 33, Actinomyces odontolyticus | 34, Actinomyces pyogenes | 35, Actinomyces viscosus | 36, Actinomyces spp. | 37, Adenovirus | 38, Adenoviridae spp. | 39, Aerococcus christensenii | 40, Aerococcus spp. | 41, Aeromonas caviae | 42, Aeromonas hydrophila | 43, Aeromonas jandaei | 44, Aeromonas media | 45, Aeromonas punctata | 46, Aeromonas salmonicida | 47, Aeromonas schubertii | 48, Aeromonas sobria | 49, Aeromonas trota | 50, Aeromonas veronii | 51, Aeromonas spp. | 52, Agrobacterium radiobacter | 53, Agrobacterium tumefaciens | 54, Agrobacterium spp. | 55, Alcaligenes faecalis | 56, Alcaligenes piechaudii | 57, Alcaligenes xylosoxidans | 58, Alcaligenes spp. | 59, Anaerobiospirillum succiniciproducens | 60, Anaerobiospirillum spp. | 61, Anaerococcus lactolyticus | 62, Anaerococcus prevotii | 63, Anaerococcus tretradius | 64, Anaerococcus vaginalis | 65, Anaerococcus spp. | 66, Anaerorhabdus furcosus | 67, Anaerorhabdus spp. | 68, Andes virus | 69, Orthohantavirus spp. | 70, Apophysomyces elegans | 71, Apophysomyces spp. | 72, Arcanobacterium haemolyticum | 73, Arcanobacterium pyogenes | 74, Arcanobacterium spp. | 75, Arcobacter cryaerophilus | 76, Arcobacter nitrofigilis | 77, Arcobacter spp. | 78, Aspergillus flavus | 79, Aspergillus fumigatus | 80, Aspergillus niger | 81, Aspergillus oryzae | 82, Aspergillus spp. | 83, Atopobium minutum | 84, Atopobium parvulum | 85, Atopobium rimae | 86, Atopobium spp. | 87, Aureobasidium pullulans | 88, Aureobasidium spp. | 89, Babesia microti | 90, Babesia spp. | 91, Bacillus anthracis | 92, Bacillus cereus | 93, Bacillus circulans | 94, Bacillus coagulans | 95, Bacillus firmus | 96, Bacillus lentus | 97, Bacillus licheniformis | 98, Bacillus megaterium | 99, Bacillus pumilus | 100, Bacillus sphaericus | 101, Bacillus stearothermophilus | 102, Bacillus subtilis | 103, Bacillus subtilis group | 104, Bacillus thuringiensis | 105, Bacillus spp. | 106, Bacteroides caccae | 107, Bacteroides capillosus | 108, Bacteroides coagulans | 109, Bacteroides distasonis | 110, Bacteroides eggerthii | 111, Bacteroides forsythus | 112, Bacteroides gracilis | 113, Bacteroides levii | 114, Bacteroides merdae | 115, Bacteroides ovatus | 116, Bacteroides pneumosintes | 117, Bacteroides putredinis | 118, Bacteroides splanchnicus | 119, Bacteroides stercoris | 120, Bacteroides tectum | 121, Bacteroides thetaiotaomicron | 122, Bacteroides uniformis | 123, Bacteroides ureolyticus | 124, Bacteroides vulgatus | 125, Bacteroides spp. | 126, Bartonella bacilliformis | 127, Bartonella henselae | 128, Bartonella quintana | 129, Bartonella vinsonii | 130, Bartonella spp. | 131, Bifidobacterium bifidum | 132, Bifidobacterium breve | 133, Bifidobacterium dentium | 134, Bifidobacterium infantis | 135, Bifidobacterium longum | 136, Bifidobacterium spp. | 137, Bilophila wadsworthia | 138, Bilophila spp. | 139, Bipolaris spicifera | 140, Bipolaris spp. | 141, Blastomyces dermatitidis | 142, Blastomyces spp. | 143, Bordetella avium | 144, Bordetella bronchiseptica | 145, Bordetella parapertussis | 146, Bordetella pertussis | 147, Bordetella spp. | 148, Borrelia burgdorferi | 149, Borrelia garinii | 150, Borrelia hermsii | 151, Borrelia parkeri | 152, Borrelia recurrentis | 153, Borrelia turicatae | 154, Borrelia spp. | 155, Brevibacillus brevis | 156, Brevibacillus laterosporus | 157, Brevibacillus spp. | 158, Brevibacterium casei | 159, Brevibacterium epidermidis | 160, Brevibacterium spp. | 161, Brevundimonas diminuta | 162, Brevundimonas vesicularis | 163, Brevundimonas spp. | 164, Brucella abortus | 165, Brucella canis | 166, Brucella melitensis | 167, Brucella suis | 168, Brucella spp. | 169, Budvicia aquatiqua | 170, Budvicia spp. | 171, Bunyavirus California encephalitis group | 172, Bunyavirus Crimean-Congo hemorrhagic | 173, Bunyavirus Rift Valley fever | 174, Bunyavirus spp. | 175, Burkholderia cenocepacia | 176, Burkholderia cepacia | 177, Burkholderia contaminans | 178, Burkholderia gladioli | 179, Burkholderia mallei | 180, Burkholderia multivorans | 181, Burkholderia pickettii | 182, Burkholderia pseudomallei | 183, Burkholderia stabilis | 184, Burkholderia spp. | 185, Buttiauxella agrestis | 186, Buttiauxella noackiae | 187, Buttiauxella spp. | 188, Calymmatobacterium granulomatis | 189, Calymmatobacterium spp. | 190, Campylobacter coli | 191, Campylobacter concisus | 192, Campylobacter cryaerophila | 193, Campylobacter curvus | 194, Campylobacter fetus | 195, Campylobacter gracilis | 196, Campylobacter hyointestinalis | 197, Campylobacter jejuni | 198, Campylobacter lari | 199, Campylobacter mucosalis | 200, Campylobacter rectus | 201, Campylobacter sputorum | 202, Campylobacter spp. | 203, Candida albicans | 204, Candida auris | 205, Candida catenulata | 206, Candida ciferrii | 207, Candida dubliniensis | 208, Candida duobushaemulonii | 209, Candida famata | 210, Candida glabrata | 211, Candida guilliermondi | 212, Candida haemulonii | 213, Candida inconspicua | 214, Candida intermedia | 215, Candida kefyr | 216, Candida krusei | 217, Candida lambica | 218, Candida lipolytica | 219, Candida lusitaniae | 220, Candida metapsilosis | 221, Candida norvegensis | 222, Candida parapsilosis | 223, Candida pelliculosa | 224, Candida pintolopesii | 225, Candida pseudotropicalis | 226, Candida pulcherrima | 227, Candida rugosa | 228, Candida stellatoidea | 229, Candida tropicalis | 230, Candida utilis | 231, Candida vini | 232, Candida viswanathii | 233, Candida zeylanoides | 234, Candida spp. | 235, Capnocytophaga canimorsus | 236, Capnocytophaga gingivalis | 237, Capnocytophaga ochracea | 238, Capnocytophaga sputigena | 239, Capnocytophaga spp. | 240, Cardiobacterium hominis | 241, Cardiobacterium spp. | 242, Cedecea davisae | 243, Cedecea lapagei | 244, Cedecea neteri | 245, Cedecea species 3 | 246, Cedecea species 5 | 247, Cedecea spp. | 248, Centipeda periodontii | 249, Centipeda spp. | 250, Chlamydia pneumoniae | 251, Chlamydia psittaci | 252, Chlamydia trachomatis | 253, Chlamydia spp. | 254, Chromobacterium violaceum | 255, Chromobacterium spp. | 256, Chryseobacterium gleum | 257, Chryseobacterium indologenes | 258, Chryseobacterium meningosepticum | 259, Chryseobacterium spp. | 260, Chryseomonas luteola | 261, Chryseomonas spp. | 262, Citrobacter amalonaticus | 263, Citrobacter braakii | 264, Citrobacter farmeri | 265, Citrobacter freundii | 266, Citrobacter sedlakii | 267, Citrobacter werkmanii | 268, Citrobacter youngae | 269, Citrobacter spp. | 270, Clostridium absonum | 271, Clostridium argentinense | 272, Clostridium baratii | 273, Clostridium bifermentans | 274, Clostridium botulinum | 275, Clostridium butyricum | 276, Clostridium cadaveris | 277, Clostridium carnis | 278, Clostridium clostridioforme | 279, Clostridium cochlearium | 280, Clostridium difficile | 281, Clostridium fallax | 282, Clostridium ghonii | 283, Clostridium glycolicum | 284, Clostridium haemolyticum | 285, Clostridium hastiforme | 286, Clostridium histolyticum | 287, Clostridium indolis | 288, Clostridium innocuum | 289, Clostridium irregulare | 290, Clostridium limosum | 291, Clostridium malenominatum | 292, Clostridium novyi type A | 293, Clostridium oroticum | 294, Clostridium paraputrificum | 295, Clostridium perfringens | 296, Clostridium putrefaciens | 297, Clostridium putrificum | 298, Clostridium ramosum | 299, Clostridium sardiniense | 300, Clostridium septicum | 301, Clostridium sordellii | 302, Clostridium sphenoides | 303, Clostridium sporogenes | 304, Clostridium subterminale | 305, Clostridium symbiosum | 306, Clostridium tertium | 307, Clostridium tetani | 308, Clostridium villosum | 309, Clostridium spp. | 310, Coccidioides immitis | 311, Coccidioides spp. | 312, Collinsella aerofaciens | 313, Collinsella spp. | 314, Comamonas acidovorans | 315, Comamonas terrigena | 316, Comamonas testosteroni | 317, Comamonas spp. | 318, Corynebacterium aquaticum | 319, Corynebacterium bovis | 320, Corynebacterium cystidis | 321, Corynebacterium diphtheriae | 322, Corynebacterium glutamicum | 323, Corynebacterium group G-2 | 324, Corynebacterium jeikeium | 325, Corynebacterium kutscheri | 326, Corynebacterium matruchotii | 327, Corynebacterium minutissimum | 328, Corynebacterium mycetoides | 329, Corynebacterium pilosum | 330, Corynebacterium pseudodiphteriticum | 331, Corynebacterium pseudotuberculosis | 332, Corynebacterium renale | 333, Corynebacterium striatum | 334, Corynebacterium ulcerans | 335, Corynebacterium urealyticum | 336, Corynebacterium xerosis | 337, Corynebacterium spp. | 338, Coxiella burnetii | 339, Coxiella spp. | 340, CRE unspecified | 341, Cronobacter dublinensis | 342, Cronobacter malonaticus | 343, Cronobacter muytjensii | 344, Cronobacter sakazakii | 345, Cronobacter turicensis | 346, Cronobacter spp. | 347, Cryptococcus albidus | 348, Cryptococcus humicola | 349, Cryptococcus laurentii | 350, Cryptococcus luteolus | 351, Cryptococcus neoformans | 352, Cryptococcus terreus | 353, Cryptococcus uniguttulatus | 354, Cryptococcus spp. | 355, Cupriavidus alkaliphilus | 356, Cupriavidus pauculus | 357, Cupriavidus spp. | 358, Curvularia lunata | 359, Curvularia spp. | 360, Delftia acidovorans | 361, Delftia spp. | 362, Dermacoccus nishionmiyeaensis | 363, Dermacoccus spp. | 364, Desulfomonas pigra | 365, Desulfomonas spp. | 366, Desulfovibrio desulfuricans | 367, Desulfovibrio spp. | 368, Dichelobacter nodosus | 369, Dichelobacter spp. | 370, Edwardsiella hoshinae | 371, Edwardsiella ictaluri | 372, Edwardsiella tarda | 373, Edwardsiella spp. | 374, Eikenella corrodens | 375, Eikenella spp. | 376, Elizabethkingia anopheles | 377, Elizabethkingia meningoseptica | 378, Elizabethkingia spp. | 379, Empedobacter brevis | 380, Empedobacter spp. | 381, Entamoeba coli | 382, Entamoeba histolytica | 383, Entamoeba spp. | 384, Enterobacter aerogenes | 385, Enterobacter agglomerans group | 386, Enterobacter amnigenus | 387, Enterobacter asburiae | 388, Enterobacter cancerogenus | 389, Enterobacter cloacae complex | 390, Enterobacter gergoviae | 391, Enterobacter hormaechei | 392, Enterobacter intermedium | 393, Enterobacter kobei | 394, Enterobacter sakazakii | 395, Enterobacter taylorae | 396, Enterobacter spp. | 397, Enterococcus avium | 398, Enterococcus casseliflavus | 399, Enterococcus dispar | 400, Enterococcus durans | 401, Enterococcus faecalis | 402, Enterococcus faecium | 403, Enterococcus flavescens | 404, Enterococcus gallinarum | 405, Enterococcus hirae | 406, Enterococcus malodoratus | 407, Enterococcus mundtii | 408, Enterococcus pseudoavium | 409, Enterococcus raffinosus | 410, Enterococcus solitarius | 411, Enterococcus spp. | 412, Enterovirus EV-D68 | 413, Enterovirus spp. | 414, Erysipelothrix rhusiopathiae | 415, Erysipelothrix spp. | 416, Escherichia albertii | 417, Escherichia blattae | 418, Escherichia coli | 419, Escherichia fergusonii | 420, Escherichia hermannii | 421, Escherichia vulneris | 422, Escherichia spp. | 423, Eubacterium aerofaciens | 424, Eubacterium alactolyticum | 425, Eubacterium brachy | 426, Eubacterium combesii | 427, Eubacterium contortum | 428, Eubacterium lentum | 429, Eubacterium limosum | 430, Eubacterium moniliforme | 431, Eubacterium nitrogenes | 432, Eubacterium nodatum | 433, Eubacterium saburreum | 434, Eubacterium sulci | 435, Eubacterium tenue | 436, Eubacterium timidum | 437, Eubacterium yurii | 438, Eubacterium spp. | 439, Ewingella americana | 440, Ewingella spp. | 441, Exophiala dermatitidis | 442, Exophiala spp. | 443, Filifactor alocis | 444, Filifactor villosus | 445, Filifactor spp. | 446, Finegoldia magna | 447, Finegoldia spp. | 448, Flavimonas oryzihabitans | 449, Flavimonas spp. | 450, Flavobacterium breve | 451, Flavobacterium meningosepticum | 452, Flavobacterium odoratum | 453, Flavobacterium sp. group II b | 454, Flavobacterium sp. group II e | 455, Flavobacterium sp. group II h | 456, Flavobacterium sp. group II i | 457, Flavobacterium spp. | 458, Fluoribacter bozemanae | 459, Fluoribacter dumoffii | 460, Fluoribacter spp. | 461, Francisella tularensis | 462, Francisella spp. | 463, Fusarium bubigeum | 464, Fusarium spp. | 465, Fusobacterium alocis | 466, Fusobacterium gonidiaformans | 467, Fusobacterium mortiferum | 468, Fusobacterium naviforme | 469, Fusobacterium necrogenes | 470, Fusobacterium necrophorum | 471, Fusobacterium nucleatum | 472, Fusobacterium periodonticum | 473, Fusobacterium russii | 474, Fusobacterium sulci | 475, Fusobacterium ulcerans | 476, Fusobacterium varium | 477, Fusobacterium spp. | 478, Gardnerella vaginalis | 479, Gardnerella spp. | 480, Gemella haemolysans | 481, Gemella morbillorum | 482, Gemella spp. | 483, Geotrichum candidum | 484, Geotrichum spp. | 485, Group A Streptococcus | 486, Group B Streptococcus | 487, Streptococcus spp. | 488, Haemophilus actinomycetemcomitans | 489, Haemophilus aphrophilus | 490, Haemophilus ducreyi | 491, Haemophilus haemolyticus | 492, Haemophilus influenzae | 493, Haemophilus parahaemolyticus | 494, Haemophilus parainfluenzae | 495, Haemophilus paraphrophilus | 496, Haemophilus spp. | 497, Hafnia alvei | 498, Hafnia alvei biogroup 1 | 499, Hafnia spp. | 500, Helicobacter cinaedi | 501, Helicobacter fennelliae | 502, Helicobacter mustelae | 503, Helicobacter pylori | 504, Helicobacter rappini | 505, Helicobacter spp. | 506, Hepatitis A | 507, Hepatitis B | 508, Hepatitis C | 509, Hepatitis D | 510, Hepatitis E | 511, Hepatovirus spp. | 512, Orthohepadnavirus spp. | 513, Hepacivirus spp. | 514, Deltavirus spp. | 515, Orthohepevirus spp. | 516, Herbaspirillum aquaticum | 517, Herbaspirillum autotrophicu | 518, Herbaspirillum chlorophenolicum | 519, Herbaspirillum frisingense | 520, Herbaspirillum hiltneri | 521, Herbaspirillum huttiense | 522, Herbaspirillum lusitanum | 523, Herbaspirillum massiliense | 524, Herbaspirillum rhizosphaerae | 525, Herbaspirillum rubrisubalbicans | 526, Herbaspirillum seropedicae | 527, Herbaspirillum spp. | 528, Histoplasma capsulatum | 529, Histoplasma spp. | 530, Human immunodeficiency virus | 531, Lentivirus | 532, Human metapneumovirus | 533, Metapneumovirus spp. | 534, Human parainfluenza virus | 535, Paramyxoviridae spp. | 536, Influenza virus | 537, Orthomyxoviridae spp. | 538, Jonesia denitrificans | 539, Jonesia spp. | 540, Kerstersia gyiorum | 541, Kerstersia spp. | 542, Kingella denitrificans | 543, Kingella indologenes | 544, Kingella kingae | 545, Kingella spp. | 546, Klebsiella aerogenes | 547, Klebsiella granulomatis | 548, Klebsiella ornithinolytica | 549, Klebsiella oxytoca | 550, Klebsiella ozaenae | 551, Klebsiella planticola | 552, Klebsiella pneumoniae | 553, Klebsiella rhinoscleromatis | 554, Klebsiella terrigena | 555, Klebsiella spp. | 556, Kluyvera ascorbata | 557, Kluyvera cryocrescens | 558, Kluyvera spp. | 559, Kluyveromyces lactis | 560, Kluyveromyces marxianus | 561, Kluyveromyces spp. | 562, Kocuria kristinae | 563, Kocuria rosea | 564, Kocuria varians | 565, Kocuria spp. | 566, Kurthia bessonii | 567, Kurthia spp. | 568, Kytococcus sedentarius | 569, Kytococcus spp. | 570, Lactobacillus acidophilus | 571, Lactobacillus amylovorus | 572, Lactobacillus brevis | 573, Lactobacillus casei | 574, Lactobacillus catenaforme | 575, Lactobacillus crispatus | 576, Lactobacillus fermentum | 577, Lactobacillus gasseri | 578, Lactobacillus jensenii | 579, Lactobacillus johnsonii | 580, Lactobacillus minutus, anaerobic | 581, Lactobacillus oris | 582, Lactobacillus rimae, anaerobic | 583, Lactobacillus uli, anaerobic | 584, Lactobacillus vaginalis | 585, Lactobacillus spp. | 586, Leclercia adecarboxylata | 587, Leclercia spp. | 588, Legionella anisa | 589, Legionella birminghamensis | 590, Legionella bozemanii | 591, Legionella brunensis | 592, Legionella cherri | 593, Legionella cincinnatiensis | 594, Legionella dumoffii | 595, Legionella erythra | 596, Legionella feelei | 597, Legionella geestiae | 598, Legionella gormanii | 599, Legionella hackeliae | 600, Legionella israelensis | 601, Legionella jamestowniensis | 602, Legionella jordanis | 603, Legionella londoniensis | 604, Legionella longbeachae | 605, Legionella maceachernii | 606, Legionella micdadei | 607, Legionella moravica | 608, Legionella nautarum | 609, Legionella oakridgensis | 610, Legionella parisiensis | 611, Legionella pneumophila | 612, Legionella quateriensis | 613, Legionella quinlivanii | 614, Legionella rubrilucens | 615, Legionella sainthelensii | 616, Legionella santicrucis | 617, Legionella shakespeareii | 618, Legionella spiritensis | 619, Legionella steigerwaltii | 620, Legionella tucsonensis | 621, Legionella wadsworthii | 622, Legionella worsliensis | 623, Legionella spp. | 624, Leifsonia aquatica | 625, Leifsonia spp. | 626, Leminorella grimontii | 627, Leminorella richardii | 628, Leminorella spp. | 629, Leptospira interrogans | 630, Leptospira spp. | 631, Leptotrichia buccalis | 632, Leptotrichia spp. | 633, Leuconostoc citreum | 634, Leuconostoc lactis | 635, Leuconostoc mesenteroides | 636, Leuconostoc pseudomesenteroides | 637, Leuconostoc spp. | 638, Listeria grayi | 639, Listeria innocua | 640, Listeria monocytogenes | 641, Listeria murrayi | 642, Listeria seeligeri | 643, Listeria spp. | 644, Macrococcus caseolyticus | 645, Macrococcus spp. | 646, Malassezia furfur | 647, Malassezia pachydermatis | 648, Malassezia spp. | 649, Measles virus | 650, Morbillivirus spp. | 651, Megasphaera elsdenii | 652, Megasphaera spp. | 653, MERS-CoV | 654, Coronavirus spp. | 655, Methylobacterium mesophilicum | 656, Methylobacterium thiocyanatum | 657, Methylobacterium spp. | 658, Microbacterium arborescens | 659, Microbacterium spp. | 660, Micrococcus luteus | 661, Micrococcus lylae | 662, Micrococcus spp. | 663, Mitsuokella dentalis | 664, Mitsuokella multiacidus | 665, Mitsuokella spp. | 666, Mobiluncus curtisii | 667, Mobiluncus mulieris | 668, Mobiluncus spp. | 669, Moellerella wisconsensis | 670, Moellerella spp. | 671, Mogibacterium timidum | 672, Mogibacterium spp. | 673, Moraxella atlantae | 674, Moraxella bovis | 675, Moraxella lacunata | 676, Moraxella nonliquefaciens | 677, Moraxella osloensis | 678, Moraxella phenylpyruvica | 679, Moraxella spp. | 680, Morganella morganii | 681, Morganella morganii biogroup 1 | 682, Morganella morganii ssp. sibonii | 683, Morganella spp. | 684, Mucor ramosissimous | 685, Mucor spp. | 686, Mycobacterium abscessus | 687, Mycobacterium africanum | 688, Mycobacterium alvei | 689, Mycobacterium arupense | 690, Mycobacterium asiaticum | 691, Mycobacterium aurum | 692, Mycobacterium avium | 693, Mycobacterium avium complex (MAC) | 694, Mycobacterium bolettii | 695, Mycobacterium bovis | 696, Mycobacterium canetti | 697, Mycobacterium chelonae | 698, Mycobacterium chimaera | 699, Mycobacterium columbiense | 700, Mycobacterium confluentis | 701, Mycobacterium cosmeticum | 702, Mycobacterium flavescens | 703, Mycobacterium fortuitum | 704, Mycobacterium gastri | 705, Mycobacterium genavense | 706, Mycobacterium goodii | 707, Mycobacterium gordonae | 708, Mycobacterium haemophilum | 709, Mycobacterium immunogenum | 710, Mycobacterium intracellulare | 711, Mycobacterium kansasii | 712, Mycobacterium leprae | 713, Mycobacterium mageritense | 714, Mycobacterium malmoense | 715, Mycobacterium marinum | 716, Mycobacterium massiliense | 717, Mycobacterium microti | 718, Mycobacterium mucogenicum | 719, Mycobacterium nonchromogenicum | 720, Mycobacterium parafortuitum | 721, Mycobacterium parascrofulaceum | 722, Mycobacterium peregrinum | 723, Mycobacterium phlei | 724, Mycobacterium phocaicum | 725, Mycobacterium porcinum | 726, Mycobacterium scrofulaceum | 727, Mycobacterium senegalense | 728, Mycobacterium septicum | 729, Mycobacterium shimoidei | 730, Mycobacterium simiae | 731, Mycobacterium smegmatis | 732, Mycobacterium szulgai | 733, Mycobacterium terrae | 734, Mycobacterium thermoresistibile | 735, Mycobacterium triviale | 736, Mycobacterium tuberculosis | 737, Mycobacterium tuberculosis complex | 738, Mycobacterium ulcerans | 739, Mycobacterium vaccae | 740, Mycobacterium wolinskyi | 741, Mycobacterium xenopi | 742, Mycobacterium spp. | 743, Mycoplasma buccale | 744, Mycoplasma faucium | 745, Mycoplasma fermentans | 746, Mycoplasma genitalium | 747, Mycoplasma hominis | 748, Mycoplasma lipophilum | 749, Mycoplasma orale | 750, Mycoplasma penetrans | 751, Mycoplasma pneumoniae | 752, Mycoplasma primatum | 753, Mycoplasma salivarium | 754, Mycoplasma spermatophilum | 755, Mycoplasma spp. | 756, Myroides odoratus | 757, Myroides spp. | 758, Naegleria fowleri | 759, Naegleria spp. | 760, Neisseria canis | 761, Neisseria cinerea | 762, Neisseria elongata | 763, Neisseria flavescens | 764, Neisseria gonorrhoeae | 765, Neisseria lactamica | 766, Neisseria meningitidis | 767, Neisseria mucosa | 768, Neisseria parelongata | 769, Neisseria polysaccharea | 770, Neisseria sicca | 771, Neisseria subflava | 772, Neisseria spp. | 773, Nocardia asteroides | 774, Nocardia brasiliensis | 775, Nocardia otitis caviarum | 776, Nocardia spp. | 777, NONE IDENTIFIED | 778, Obesumbacterium Biogroup 2 | 779, Obesumbacterium spp. | 780, Ochrobactrum anthropi | 781, Ochrobactrum spp. | 782, Oerskovia turbata | 783, Oerskovia xanthineolytica | 784, Oerskovia spp. | 785, Oligella ureolytica | 786, Oligella urethralis | 787, Oligella spp. | 788, Orientia tsutsugamushi | 789, Orientia spp. | 790, Paecilomyces lilacinus | 791, Purpureocillium spp. | 792, Paenibacillus alvei | 793, Paenibacillus macerans | 794, Paenibacillus polymyxa | 795, Paenibacillus spp. | 796, Pantoea agglomerans | 797, Pantoea dispersa | 798, Pantoea septica | 799, Pantoea spp. | 800, Paracoccus yeei | 801, Paracoccus spp. | 802, Parvimonas micra | 803, Peptostreptococcus spp. | 804, Pasteurella aerogenes | 805, Pasteurella bettyae | 806, Pasteurella canis | 807, Pasteurella dagmatis | 808, Pasteurella gallinarum | 809, Pasteurella haemolytica | 810, Pasteurella multocida | 811, Pasteurella pneumotropica | 812, Pasteurella spp. | 813, Pediococcus acidilactici | 814, Pediococcus pentosaceus | 815, Pediococcus spp. | 816, Penicillium chrysogenum | 817, Penicillium spp. | 818, Peptococcus niger | 819, Peptococcus spp. | 820, Peptostreptococcus anaerobius | 821, Peptostreptococcus asaccharolyticus | 822, Peptostreptococcus hydrogenalis | 823, Peptostreptococcus indolicus | 824, Peptostreptococcus lacrimalis | 825, Peptostreptococcus lactolyticus | 826, Peptostreptococcus magnus | 827, Peptostreptococcus parvulus | 828, Peptostreptococcus prevotii | 829, Peptostreptococcus productus | 830, Peptostreptococcus tetradius | 831, Peptostreptococcus vaginalis | 832, Peptostreptococcus spp. | 833, Phaeococcomyces exophialae | 834, Phaeococcomyces spp. | 835, Phialemoniopsis pluiroculosa | 836, Phialemoniopsis spp. | 837, Photobacterium damselae subsp damselae | 838, Photobacterium spp. | 839, Pichia anomala | 840, Pichia farinosa | 841, Pichia ohmeri | 842, Pichia polymorpha | 843, Pichia spp. | 844, Plasmodium falciparum | 845, Plasmodium malariae | 846, Plasmodium ovale | 847, Plasmodium vivax | 848, Plasmodium spp. | 849, Poliovirus | 850, Porphyromonas asaccharolytica | 851, Porphyromonas endodontalis | 852, Porphyromonas gingivalis | 853, Porphyromonas levii | 854, Porphyromonas salivosa | 855, Porphyromonas spp. | 856, Poxviridae molluscum contagiosum | 857, Poxviridae Orthopoxvirus | 858, Poxviridae spp. | 859, Pragia fontium | 860, Pragia spp. | 861, Prevotella bivia | 862, Prevotella buccae | 863, Prevotella buccalis | 864, Prevotella corporis | 865, Prevotella dentalis | 866, Prevotella denticola | 867, Prevotella disiens | 868, Prevotella heparinolytica | 869, Prevotella intermedia | 870, Prevotella loescheii | 871, Prevotella melaninogenica | 872, Prevotella nigrescens | 873, Prevotella oralis | 874, Prevotella oris | 875, Prevotella oulorum | 876, Prevotella ruminicola | 877, Prevotella veroralis | 878, Prevotella zoogleoformans | 879, Prevotella spp. | 880, Prion | 881, Propionibacterium acnes | 882, Propionibacterium avidum | 883, Propionibacterium granulosum | 884, Propionibacterium lymphophilum | 885, Propionibacterium propionicum | 886, Propionibacterium spp. | 887, Proteus hauseri | 888, Proteus mirabilis | 889, Proteus myxofaciens | 890, Proteus penneri | 891, Proteus vulgaris | 892, Proteus spp. | 893, Prototheca wickerhamii | 894, Prototheca zopfii | 895, Prototheca spp. | 896, Providencia alcalifaciens | 897, Providencia heimbachae | 898, Providencia rettgeri | 899, Providencia rustigianii | 900, Providencia stuartii | 901, Providencia spp. | 902, Pseudallescheria boydii | 903, Pseudallescheria spp. | 904, Pseudomonas aeruginosa | 905, Pseudomonas alcaligenes | 906, Pseudomonas chlororaphis | 907, Pseudomonas delafieldii | 908, Pseudomonas diminuta | 909, Pseudomonas fluorescens | 910, Pseudomonas mendocina | 911, Pseudomonas oryzihabitans | 912, Pseudomonas otitidis | 913, Pseudomonas pertucigena | 914, Pseudomonas pickettii | 915, Pseudomonas proteolytica | 916, Pseudomonas pseudoalcaligenes | 917, Pseudomonas putida | 918, Pseudomonas sp. group 1 | 919, Pseudomonas stutzeri | 920, Pseudomonas thomasii | 921, Pseudomonas vesicularis | 922, Pseudomonas-like group 2 | 923, Pseudomonas spp. | 924, Pseudoramibacter alactolyticus | 925, Pseudoramibacter spp. | 926, Psychrobacter immobilis | 927, Psychrobacter spp. | 928, Purpureocillium lilacinum | 929, Purpureocillium spp. | 930, Rabies Lyssavirus | 931, Lyssavirus spp. | 932, Rahnella aquatilis | 933, Rahnella spp. | 934, Ralstonia insidiosa | 935, Ralstonia mannitolilytica | 936, Ralstonia paucula | 937, Ralstonia pickettii | 938, Ralstonia spp. | 939, Raoultella ornithinolytica | 940, Raoultella planticola | 941, Raoultella terrigena | 942, Raoultella spp. | 943, Reovirus reovirus, types 1 2 | 944, Reovirus spp. | 945, Respiratory syncytial virus | 946, Orthopneumovirus spp. | 947, Rhinovirus | 948, Rhizobium radiobacter | 949, Rhizopus oligosporus | 950, Rhizopus spp. | 951, Rhodococcus equi | 952, Rhodococcus spp. | 953, Rhodotorula glutinis | 954, Rhodotorula minuta | 955, Rhodotorula pilimanae | 956, Rhodotorula rubra | 957, Rhodotorula spp. | 958, Rickettsia akari | 959, Rickettsia conorii | 960, Rickettsia prowazeki | 961, Rickettsia rickettsii | 962, Rickettsia tsutsugamushi | 963, Rickettsia typhi | 964, Rickettsia spp. | 965, Rochalimaea henselae | 966, Rochalimaea quintana | 967, Rochalimaea vinsonii | 968, Rochalimaea spp. | 969, Roseomonas gilardii | 970, Roseomonas mucosa | 971, Roseomonas spp. | 972, Rothia dentocariosa | 973, Rothia mucilaginosa | 974, Rothia spp. | 975, Ruminococcus hansenii | 976, Ruminococcus productus | 977, Ruminococcus spp. | 978, Saccharomyces cerevisiae | 979, Saccharomyces spp. | 980, Salmonella agbeni | 981, Salmonella agona | 982, Salmonella arizonae | 983, Salmonella braenderup | 984, Salmonella choleraesuis | 985, Salmonella corvallis | 986, Salmonella dublin | 987, Salmonella enterica | 988, Salmonella enteritidis | 989, Salmonella group A | 990, Salmonella group B | 991, Salmonella group C1 | 992, Salmonella group C2 | 993, Salmonella group D | 994, Salmonella group E | 995, Salmonella heidelberg | 996, Salmonella infantis | 997, Salmonella meleagridis | 998, Salmonella montevideo | 999, Salmonella newport | 1000, Salmonella oranienburg | 1001, Salmonella panama | 1002, Salmonella paratyphi A | 1003, Salmonella paratyphi B | 1004, Salmonella paratyphi C | 1005, Salmonella poona | 1006, Salmonella rissen | 1007, Salmonella saint-paul | 1008, Salmonella subgroup 2, subgenus II | 1009, Salmonella subgroup 3a, Arizona-monopha | 1010, Salmonella subgroup 3b, Arizona-diphasi | 1011, Salmonella subgroup 4, subgenus IV | 1012, Salmonella subgroup 5, subgenus V | 1013, Salmonella typhi | 1014, Salmonella typhimurium | 1015, Salmonella spp. | 1016, Sarcinosporon inkin | 1017, Sarcinosporon spp. | 1018, Sarcoptes scabiei (scabies) | 1019, Sarcoptes spp. | 1020, Scedosporium spp. | 1021, Scedosporium spp. | 1022, Selenomonas artemidis | 1023, Selenomonas dianae | 1024, Selenomonas flueggei | 1025, Selenomonas infelix | 1026, Selenomonas noxia | 1027, Selenomonas sputigena | 1028, Selenomonas spp. | 1029, Serpulina jonesii | 1030, Serpulina spp. | 1031, Serratia entomophila | 1032, Serratia ficaria | 1033, Serratia fonticola | 1034, Serratia grimesii | 1035, Serratia liquefaciens | 1036, Serratia marcescens | 1037, Serratia odorifera | 1038, Serratia plymuthica | 1039, Serratia proteamaculans | 1040, Serratia rubidaea | 1041, Serratia spp. | 1042, Shewanella putrefaciens | 1043, Shewanella spp. | 1044, Shigella Group A | 1045, Shigella Group B | 1046, Shigella Group C | 1047, Shigella Group D | 1048, Shigella spp. | 1049, Sphingobacterium mizutii | 1050, Sphingobacterium multivorum | 1051, Sphingobacterium spiritivorum | 1052, Sphingobacterium thalpophylum | 1053, Sphingobacterium yabuuchiae | 1054, Sphingobacterium spp. | 1055, Sphingomonas mucosissima | 1056, Sphingomonas paucimobilis | 1057, Sphingomonas spp. | 1058, Spirillum minus | 1059, Spirillum spp. | 1060, Sporobolomyces salmonicolor | 1061, Sporobolomyces spp. | 1062, Sporothrix schenckii | 1063, Sporothrix spp. | 1064, Staphylococcus arlettae | 1065, Staphylococcus aureus | 1066, Staphylococcus capitis | 1067, Staphylococcus caprae | 1068, Staphylococcus carnosus | 1069, Staphylococcus chromogenes | 1070, Staphylococcus coagulans | 1071, Staphylococcus coagulase positive | 1072, Staphylococcus cohnii | 1073, Staphylococcus epidermidis | 1074, Staphylococcus equorum | 1075, Staphylococcus hominis | 1076, Staphylococcus hyicus | 1077, Staphylococcus intermedius | 1078, Staphylococcus kloosii | 1079, Staphylococcus schleiferi | 1080, Staphylococcus spp. | 1081, Stenotrophomonas maltophilia | 1082, Stenotrophomonas spp. | 1083, Stomatococcus mucilaginosus | 1084, Stomatococcus spp. | 1085, Streptobacillus moniliformis | 1086, Streptobacillus spp. | 1087, Streptococcus acidominimus | 1088, Streptococcus adjacens | 1089, Streptococcus agalactiae | 1090, Streptococcus alpha-hemolytic | 1091, Streptococcus anginosus | 1092, Streptococcus anginosus group | 1093, Streptococcus beta-hemolytic | 1094, Streptococcus bovis | 1095, Streptococcus constellatus | 1096, Streptococcus crista | 1097, Streptococcus D unspecified, non-entero | 1098, Streptococcus defectivus | 1099, Streptococcus dysgalactiae | 1100, Streptococcus equi | 1101, Streptococcus equinus | 1102, Streptococcus gamma-hemolytic | 1103, Streptococcus gordonii | 1104, Streptococcus group C | 1105, Streptococcus group E | 1106, Streptococcus group F | 1107, Streptococcus group G | 1108, Streptococcus hansenii | 1109, Streptococcus iniae | 1110, Streptococcus intermedius | 1111, Streptococcus mitis | 1112, Streptococcus mitis group | 1113, Streptococcus mutans | 1114, Streptococcus oralis | 1115, Streptococcus parasanguis | 1116, Streptococcus pleomorphus, anaerobic | 1117, Streptococcus pneumoniae | 1118, Streptococcus pyogenes | 1119, Streptococcus salivarius | 1120, Streptococcus sanguis | 1121, Streptococcus sanguis II | 1122, Streptococcus sobrinus | 1123, Streptococcus uberis | 1124, Streptococcus vestibularis | 1125, Streptococcus viridans spp. | 1126, Streptococcus alpha non hemolytic | 1127, Streptococcus non-group A non-group B, beta-hemolytic | 1128, Streptococcus spp. | 1129, Suttonella indologenes | 1130, Suttonella spp. | 1131, Tatlockia macaechernii | 1132, Tatlockia micdadei | 1133, Tatlockia spp. | 1134, Tatumella ptyseos | 1135, Tatumella spp. | 1136, Tissierella praeacuta | 1137, Tissierella spp. | 1138, Togavirus dengue | 1139, Togavirus Eastern equine encephalitis | 1140, Togavirus tick-borne encephalitis | 1141, Togavirus spp. | 1142, Trichosporon asahii | 1143, Trichosporon beigelii | 1144, Trichosporon mucoides | 1145, Trichosporon pullulans | 1146, Trichosporon spp. | 1147, Trypanosoma brucei | 1148, Trypanosoma cruzi | 1149, Trypanosoma Trypan-Afr | 1150, Trypanosoma Trypan-Chag | 1151, Trypanosoma spp. | 1152, Tsukamurella pulmonis | 1153, Tsukamurella spp. | 1154, Ureaplasma urealyticum | 1155, Ureaplasma spp. | 1156, Varicella-zoster virus | 1157, Varicellovirus spp. | 1158, Veillonella parvula | 1159, Veillonella spp. | 1160, Vermamoeba vermiformis | 1161, Hartmannella spp. | 1162, Vibrio alginolyticus | 1163, Vibrio cholerae | 1164, Vibrio cincinnatiensis | 1165, Vibrio damsela | 1166, Vibrio fluvialis | 1167, Vibrio furnissii | 1168, Vibrio harveyi | 1169, Vibrio hollisae | 1170, Vibrio metschnikovii | 1171, Vibrio mimicus | 1172, Vibrio parahaemolyticus | 1173, Vibrio vulnificus | 1174, Vibrio spp. | 1175, Virgibacillus pantothenticus | 1176, Virgibacillus spp. | 1177, Weeksella virosa | 1178, Weeksella zoohelcum | 1179, Weeksella spp. | 1180, Wolinella succinogenes | 1181, Wolinella spp. | 1182, Xenorhabdus luminescens | 1183, Xenorhabdus nematophilus | 1184, Xenorhabdus spp. | 1185, Yersinia aldovae | 1186, Yersinia bercovieri | 1187, Yersinia enterocolitica | 1188, Yersinia frederiksenii | 1189, Yersinia intermedia | 1190, Yersinia kristensenii | 1191, Yersinia mollaretii | 1192, Yersinia pestis | 1193, Yersinia pseudotuberculosis | 1194, Yersinia rohdei | 1195, Yersinia ruckeri | 1196, Yersinia spp. | 1197, Yokenella regensburgei (Koserella trabulsii) | 1198, Yokenella spp. (Koserella spp.) | 1199, Zika virus | 1200, Flavivirus spp.",,autocomplete,,,,,,,,,,
type_of_positive_test_1,hai_standardized_variable_list_outbreak_only,,checkbox,"Pathogen 1: Type of positive test(s)","1, PCR | 2, Cultures | 3, Antigen | 4, Titers | 5, Microscopy","Check all that apply.",,,,,,,,,,,
number_of_positive_tests_1,hai_standardized_variable_list_outbreak_only,,text,"Pathogen 1: Total number of positive tests",,"Indicate the total number of positive tests for all test types reported.",,,,,,,,,,,
path_positive_test_notes_1,hai_standardized_variable_list_outbreak_only,,text,"Pathogen 1: Positive test notes",,"Include additional information if applicable (e.g., the exact number of tests per test type).",,,,,,,,,,,
another_pathogen_yesno_2,hai_standardized_variable_list_outbreak_only,,yesno,"Another pathogen involved?",,,,,,,,,,,,,
pathogen_2,hai_standardized_variable_list_outbreak_only,,dropdown,"Pathogen 2:","1, Acanthamoeba keratitis | 2, Acanthamoeba spp. | 3, Achromobacter xylosoxidans | 4, Achromobacter spp. | 5, Acidaminococcus fermentans | 6, Acidaminococcus spp. | 7, Acidovorax delafieldii | 8, Acidovorax spp. | 9, Acinetobacter baumannii | 10, Acinetobacter calcoaceticus | 11, Acinetobacter genospecies 3 | 12, Acinetobacter guillouiae | 13, Acinetobacter haemolyticus | 14, Acinetobacter johnsonii | 15, Acinetobacter junii | 16, Acinetobacter lwoffii | 17, Acinetobacter pittii | 18, Acinetobacter proteolyticus | 19, Acinetobacter radioreisistens | 20, Acinetobacter spp. | 21, Actinobacillus actinomycetemcomitans | 22, Actinobacillus equuli | 23, Actinobacillus lignieresii | 24, Actinobacillus suis | 25, Actinobacillus ureae | 26, Actinobacillus spp. | 27, Actinomyces bovis | 28, Actinomyces georgiae | 29, Actinomyces gerencseriae | 30, Actinomyces israelii | 31, Actinomyces meyeri | 32, Actinomyces naeslundii | 33, Actinomyces odontolyticus | 34, Actinomyces pyogenes | 35, Actinomyces viscosus | 36, Actinomyces spp. | 37, Adenovirus | 38, Adenoviridae spp. | 39, Aerococcus christensenii | 40, Aerococcus spp. | 41, Aeromonas caviae | 42, Aeromonas hydrophila | 43, Aeromonas jandaei | 44, Aeromonas media | 45, Aeromonas punctata | 46, Aeromonas salmonicida | 47, Aeromonas schubertii | 48, Aeromonas sobria | 49, Aeromonas trota | 50, Aeromonas veronii | 51, Aeromonas spp. | 52, Agrobacterium radiobacter | 53, Agrobacterium tumefaciens | 54, Agrobacterium spp. | 55, Alcaligenes faecalis | 56, Alcaligenes piechaudii | 57, Alcaligenes xylosoxidans | 58, Alcaligenes spp. | 59, Anaerobiospirillum succiniciproducens | 60, Anaerobiospirillum spp. | 61, Anaerococcus lactolyticus | 62, Anaerococcus prevotii | 63, Anaerococcus tretradius | 64, Anaerococcus vaginalis | 65, Anaerococcus spp. | 66, Anaerorhabdus furcosus | 67, Anaerorhabdus spp. | 68, Andes virus | 69, Orthohantavirus spp. | 70, Apophysomyces elegans | 71, Apophysomyces spp. | 72, Arcanobacterium haemolyticum | 73, Arcanobacterium pyogenes | 74, Arcanobacterium spp. | 75, Arcobacter cryaerophilus | 76, Arcobacter nitrofigilis | 77, Arcobacter spp. | 78, Aspergillus flavus | 79, Aspergillus fumigatus | 80, Aspergillus niger | 81, Aspergillus oryzae | 82, Aspergillus spp. | 83, Atopobium minutum | 84, Atopobium parvulum | 85, Atopobium rimae | 86, Atopobium spp. | 87, Aureobasidium pullulans | 88, Aureobasidium spp. | 89, Babesia microti | 90, Babesia spp. | 91, Bacillus anthracis | 92, Bacillus cereus | 93, Bacillus circulans | 94, Bacillus coagulans | 95, Bacillus firmus | 96, Bacillus lentus | 97, Bacillus licheniformis | 98, Bacillus megaterium | 99, Bacillus pumilus | 100, Bacillus sphaericus | 101, Bacillus stearothermophilus | 102, Bacillus subtilis | 103, Bacillus subtilis group | 104, Bacillus thuringiensis | 105, Bacillus spp. | 106, Bacteroides caccae | 107, Bacteroides capillosus | 108, Bacteroides coagulans | 109, Bacteroides distasonis | 110, Bacteroides eggerthii | 111, Bacteroides forsythus | 112, Bacteroides gracilis | 113, Bacteroides levii | 114, Bacteroides merdae | 115, Bacteroides ovatus | 116, Bacteroides pneumosintes | 117, Bacteroides putredinis | 118, Bacteroides splanchnicus | 119, Bacteroides stercoris | 120, Bacteroides tectum | 121, Bacteroides thetaiotaomicron | 122, Bacteroides uniformis | 123, Bacteroides ureolyticus | 124, Bacteroides vulgatus | 125, Bacteroides spp. | 126, Bartonella bacilliformis | 127, Bartonella henselae | 128, Bartonella quintana | 129, Bartonella vinsonii | 130, Bartonella spp. | 131, Bifidobacterium bifidum | 132, Bifidobacterium breve | 133, Bifidobacterium dentium | 134, Bifidobacterium infantis | 135, Bifidobacterium longum | 136, Bifidobacterium spp. | 137, Bilophila wadsworthia | 138, Bilophila spp. | 139, Bipolaris spicifera | 140, Bipolaris spp. | 141, Blastomyces dermatitidis | 142, Blastomyces spp. | 143, Bordetella avium | 144, Bordetella bronchiseptica | 145, Bordetella parapertussis | 146, Bordetella pertussis | 147, Bordetella spp. | 148, Borrelia burgdorferi | 149, Borrelia garinii | 150, Borrelia hermsii | 151, Borrelia parkeri | 152, Borrelia recurrentis | 153, Borrelia turicatae | 154, Borrelia spp. | 155, Brevibacillus brevis | 156, Brevibacillus laterosporus | 157, Brevibacillus spp. | 158, Brevibacterium casei | 159, Brevibacterium epidermidis | 160, Brevibacterium spp. | 161, Brevundimonas diminuta | 162, Brevundimonas vesicularis | 163, Brevundimonas spp. | 164, Brucella abortus | 165, Brucella canis | 166, Brucella melitensis | 167, Brucella suis | 168, Brucella spp. | 169, Budvicia aquatiqua | 170, Budvicia spp. | 171, Bunyavirus California encephalitis group | 172, Bunyavirus Crimean-Congo hemorrhagic | 173, Bunyavirus Rift Valley fever | 174, Bunyavirus spp. | 175, Burkholderia cenocepacia | 176, Burkholderia cepacia | 177, Burkholderia contaminans | 178, Burkholderia gladioli | 179, Burkholderia mallei | 180, Burkholderia multivorans | 181, Burkholderia pickettii | 182, Burkholderia pseudomallei | 183, Burkholderia stabilis | 184, Burkholderia spp. | 185, Buttiauxella agrestis | 186, Buttiauxella noackiae | 187, Buttiauxella spp. | 188, Calymmatobacterium granulomatis | 189, Calymmatobacterium spp. | 190, Campylobacter coli | 191, Campylobacter concisus | 192, Campylobacter cryaerophila | 193, Campylobacter curvus | 194, Campylobacter fetus | 195, Campylobacter gracilis | 196, Campylobacter hyointestinalis | 197, Campylobacter jejuni | 198, Campylobacter lari | 199, Campylobacter mucosalis | 200, Campylobacter rectus | 201, Campylobacter sputorum | 202, Campylobacter spp. | 203, Candida albicans | 204, Candida auris | 205, Candida catenulata | 206, Candida ciferrii | 207, Candida dubliniensis | 208, Candida duobushaemulonii | 209, Candida famata | 210, Candida glabrata | 211, Candida guilliermondi | 212, Candida haemulonii | 213, Candida inconspicua | 214, Candida intermedia | 215, Candida kefyr | 216, Candida krusei | 217, Candida lambica | 218, Candida lipolytica | 219, Candida lusitaniae | 220, Candida metapsilosis | 221, Candida norvegensis | 222, Candida parapsilosis | 223, Candida pelliculosa | 224, Candida pintolopesii | 225, Candida pseudotropicalis | 226, Candida pulcherrima | 227, Candida rugosa | 228, Candida stellatoidea | 229, Candida tropicalis | 230, Candida utilis | 231, Candida vini | 232, Candida viswanathii | 233, Candida zeylanoides | 234, Candida spp. | 235, Capnocytophaga canimorsus | 236, Capnocytophaga gingivalis | 237, Capnocytophaga ochracea | 238, Capnocytophaga sputigena | 239, Capnocytophaga spp. | 240, Cardiobacterium hominis | 241, Cardiobacterium spp. | 242, Cedecea davisae | 243, Cedecea lapagei | 244, Cedecea neteri | 245, Cedecea species 3 | 246, Cedecea species 5 | 247, Cedecea spp. | 248, Centipeda periodontii | 249, Centipeda spp. | 250, Chlamydia pneumoniae | 251, Chlamydia psittaci | 252, Chlamydia trachomatis | 253, Chlamydia spp. | 254, Chromobacterium violaceum | 255, Chromobacterium spp. | 256, Chryseobacterium gleum | 257, Chryseobacterium indologenes | 258, Chryseobacterium meningosepticum | 259, Chryseobacterium spp. | 260, Chryseomonas luteola | 261, Chryseomonas spp. | 262, Citrobacter amalonaticus | 263, Citrobacter braakii | 264, Citrobacter farmeri | 265, Citrobacter freundii | 266, Citrobacter sedlakii | 267, Citrobacter werkmanii | 268, Citrobacter youngae | 269, Citrobacter spp. | 270, Clostridium absonum | 271, Clostridium argentinense | 272, Clostridium baratii | 273, Clostridium bifermentans | 274, Clostridium botulinum | 275, Clostridium butyricum | 276, Clostridium cadaveris | 277, Clostridium carnis | 278, Clostridium clostridioforme | 279, Clostridium cochlearium | 280, Clostridium difficile | 281, Clostridium fallax | 282, Clostridium ghonii | 283, Clostridium glycolicum | 284, Clostridium haemolyticum | 285, Clostridium hastiforme | 286, Clostridium histolyticum | 287, Clostridium indolis | 288, Clostridium innocuum | 289, Clostridium irregulare | 290, Clostridium limosum | 291, Clostridium malenominatum | 292, Clostridium novyi type A | 293, Clostridium oroticum | 294, Clostridium paraputrificum | 295, Clostridium perfringens | 296, Clostridium putrefaciens | 297, Clostridium putrificum | 298, Clostridium ramosum | 299, Clostridium sardiniense | 300, Clostridium septicum | 301, Clostridium sordellii | 302, Clostridium sphenoides | 303, Clostridium sporogenes | 304, Clostridium subterminale | 305, Clostridium symbiosum | 306, Clostridium tertium | 307, Clostridium tetani | 308, Clostridium villosum | 309, Clostridium spp. | 310, Coccidioides immitis | 311, Coccidioides spp. | 312, Collinsella aerofaciens | 313, Collinsella spp. | 314, Comamonas acidovorans | 315, Comamonas terrigena | 316, Comamonas testosteroni | 317, Comamonas spp. | 318, Corynebacterium aquaticum | 319, Corynebacterium bovis | 320, Corynebacterium cystidis | 321, Corynebacterium diphtheriae | 322, Corynebacterium glutamicum | 323, Corynebacterium group G-2 | 324, Corynebacterium jeikeium | 325, Corynebacterium kutscheri | 326, Corynebacterium matruchotii | 327, Corynebacterium minutissimum | 328, Corynebacterium mycetoides | 329, Corynebacterium pilosum | 330, Corynebacterium pseudodiphteriticum | 331, Corynebacterium pseudotuberculosis | 332, Corynebacterium renale | 333, Corynebacterium striatum | 334, Corynebacterium ulcerans | 335, Corynebacterium urealyticum | 336, Corynebacterium xerosis | 337, Corynebacterium spp. | 338, Coxiella burnetii | 339, Coxiella spp. | 340, CRE unspecified | 341, Cronobacter dublinensis | 342, Cronobacter malonaticus | 343, Cronobacter muytjensii | 344, Cronobacter sakazakii | 345, Cronobacter turicensis | 346, Cronobacter spp. | 347, Cryptococcus albidus | 348, Cryptococcus humicola | 349, Cryptococcus laurentii | 350, Cryptococcus luteolus | 351, Cryptococcus neoformans | 352, Cryptococcus terreus | 353, Cryptococcus uniguttulatus | 354, Cryptococcus spp. | 355, Cupriavidus alkaliphilus | 356, Cupriavidus pauculus | 357, Cupriavidus spp. | 358, Curvularia lunata | 359, Curvularia spp. | 360, Delftia acidovorans | 361, Delftia spp. | 362, Dermacoccus nishionmiyeaensis | 363, Dermacoccus spp. | 364, Desulfomonas pigra | 365, Desulfomonas spp. | 366, Desulfovibrio desulfuricans | 367, Desulfovibrio spp. | 368, Dichelobacter nodosus | 369, Dichelobacter spp. | 370, Edwardsiella hoshinae | 371, Edwardsiella ictaluri | 372, Edwardsiella tarda | 373, Edwardsiella spp. | 374, Eikenella corrodens | 375, Eikenella spp. | 376, Elizabethkingia anopheles | 377, Elizabethkingia meningoseptica | 378, Elizabethkingia spp. | 379, Empedobacter brevis | 380, Empedobacter spp. | 381, Entamoeba coli | 382, Entamoeba histolytica | 383, Entamoeba spp. | 384, Enterobacter aerogenes | 385, Enterobacter agglomerans group | 386, Enterobacter amnigenus | 387, Enterobacter asburiae | 388, Enterobacter cancerogenus | 389, Enterobacter cloacae complex | 390, Enterobacter gergoviae | 391, Enterobacter hormaechei | 392, Enterobacter intermedium | 393, Enterobacter kobei | 394, Enterobacter sakazakii | 395, Enterobacter taylorae | 396, Enterobacter spp. | 397, Enterococcus avium | 398, Enterococcus casseliflavus | 399, Enterococcus dispar | 400, Enterococcus durans | 401, Enterococcus faecalis | 402, Enterococcus faecium | 403, Enterococcus flavescens | 404, Enterococcus gallinarum | 405, Enterococcus hirae | 406, Enterococcus malodoratus | 407, Enterococcus mundtii | 408, Enterococcus pseudoavium | 409, Enterococcus raffinosus | 410, Enterococcus solitarius | 411, Enterococcus spp. | 412, Enterovirus EV-D68 | 413, Enterovirus spp. | 414, Erysipelothrix rhusiopathiae | 415, Erysipelothrix spp. | 416, Escherichia albertii | 417, Escherichia blattae | 418, Escherichia coli | 419, Escherichia fergusonii | 420, Escherichia hermannii | 421, Escherichia vulneris | 422, Escherichia spp. | 423, Eubacterium aerofaciens | 424, Eubacterium alactolyticum | 425, Eubacterium brachy | 426, Eubacterium combesii | 427, Eubacterium contortum | 428, Eubacterium lentum | 429, Eubacterium limosum | 430, Eubacterium moniliforme | 431, Eubacterium nitrogenes | 432, Eubacterium nodatum | 433, Eubacterium saburreum | 434, Eubacterium sulci | 435, Eubacterium tenue | 436, Eubacterium timidum | 437, Eubacterium yurii | 438, Eubacterium spp. | 439, Ewingella americana | 440, Ewingella spp. | 441, Exophiala dermatitidis | 442, Exophiala spp. | 443, Filifactor alocis | 444, Filifactor villosus | 445, Filifactor spp. | 446, Finegoldia magna | 447, Finegoldia spp. | 448, Flavimonas oryzihabitans | 449, Flavimonas spp. | 450, Flavobacterium breve | 451, Flavobacterium meningosepticum | 452, Flavobacterium odoratum | 453, Flavobacterium sp. group II b | 454, Flavobacterium sp. group II e | 455, Flavobacterium sp. group II h | 456, Flavobacterium sp. group II i | 457, Flavobacterium spp. | 458, Fluoribacter bozemanae | 459, Fluoribacter dumoffii | 460, Fluoribacter spp. | 461, Francisella tularensis | 462, Francisella spp. | 463, Fusarium bubigeum | 464, Fusarium spp. | 465, Fusobacterium alocis | 466, Fusobacterium gonidiaformans | 467, Fusobacterium mortiferum | 468, Fusobacterium naviforme | 469, Fusobacterium necrogenes | 470, Fusobacterium necrophorum | 471, Fusobacterium nucleatum | 472, Fusobacterium periodonticum | 473, Fusobacterium russii | 474, Fusobacterium sulci | 475, Fusobacterium ulcerans | 476, Fusobacterium varium | 477, Fusobacterium spp. | 478, Gardnerella vaginalis | 479, Gardnerella spp. | 480, Gemella haemolysans | 481, Gemella morbillorum | 482, Gemella spp. | 483, Geotrichum candidum | 484, Geotrichum spp. | 485, Group A Streptococcus | 486, Group B Streptococcus | 487, Streptococcus spp. | 488, Haemophilus actinomycetemcomitans | 489, Haemophilus aphrophilus | 490, Haemophilus ducreyi | 491, Haemophilus haemolyticus | 492, Haemophilus influenzae | 493, Haemophilus parahaemolyticus | 494, Haemophilus parainfluenzae | 495, Haemophilus paraphrophilus | 496, Haemophilus spp. | 497, Hafnia alvei | 498, Hafnia alvei biogroup 1 | 499, Hafnia spp. | 500, Helicobacter cinaedi | 501, Helicobacter fennelliae | 502, Helicobacter mustelae | 503, Helicobacter pylori | 504, Helicobacter rappini | 505, Helicobacter spp. | 506, Hepatitis A | 507, Hepatitis B | 508, Hepatitis C | 509, Hepatitis D | 510, Hepatitis E | 511, Hepatovirus spp. | 512, Orthohepadnavirus spp. | 513, Hepacivirus spp. | 514, Deltavirus spp. | 515, Orthohepevirus spp. | 516, Herbaspirillum aquaticum | 517, Herbaspirillum autotrophicu | 518, Herbaspirillum chlorophenolicum | 519, Herbaspirillum frisingense | 520, Herbaspirillum hiltneri | 521, Herbaspirillum huttiense | 522, Herbaspirillum lusitanum | 523, Herbaspirillum massiliense | 524, Herbaspirillum rhizosphaerae | 525, Herbaspirillum rubrisubalbicans | 526, Herbaspirillum seropedicae | 527, Herbaspirillum spp. | 528, Histoplasma capsulatum | 529, Histoplasma spp. | 530, Human immunodeficiency virus | 531, Lentivirus | 532, Human metapneumovirus | 533, Metapneumovirus spp. | 534, Human parainfluenza virus | 535, Paramyxoviridae spp. | 536, Influenza virus | 537, Orthomyxoviridae spp. | 538, Jonesia denitrificans | 539, Jonesia spp. | 540, Kerstersia gyiorum | 541, Kerstersia spp. | 542, Kingella denitrificans | 543, Kingella indologenes | 544, Kingella kingae | 545, Kingella spp. | 546, Klebsiella aerogenes | 547, Klebsiella granulomatis | 548, Klebsiella ornithinolytica | 549, Klebsiella oxytoca | 550, Klebsiella ozaenae | 551, Klebsiella planticola | 552, Klebsiella pneumoniae | 553, Klebsiella rhinoscleromatis | 554, Klebsiella terrigena | 555, Klebsiella spp. | 556, Kluyvera ascorbata | 557, Kluyvera cryocrescens | 558, Kluyvera spp. | 559, Kluyveromyces lactis | 560, Kluyveromyces marxianus | 561, Kluyveromyces spp. | 562, Kocuria kristinae | 563, Kocuria rosea | 564, Kocuria varians | 565, Kocuria spp. | 566, Kurthia bessonii | 567, Kurthia spp. | 568, Kytococcus sedentarius | 569, Kytococcus spp. | 570, Lactobacillus acidophilus | 571, Lactobacillus amylovorus | 572, Lactobacillus brevis | 573, Lactobacillus casei | 574, Lactobacillus catenaforme | 575, Lactobacillus crispatus | 576, Lactobacillus fermentum | 577, Lactobacillus gasseri | 578, Lactobacillus jensenii | 579, Lactobacillus johnsonii | 580, Lactobacillus minutus, anaerobic | 581, Lactobacillus oris | 582, Lactobacillus rimae, anaerobic | 583, Lactobacillus uli, anaerobic | 584, Lactobacillus vaginalis | 585, Lactobacillus spp. | 586, Leclercia adecarboxylata | 587, Leclercia spp. | 588, Legionella anisa | 589, Legionella birminghamensis | 590, Legionella bozemanii | 591, Legionella brunensis | 592, Legionella cherri | 593, Legionella cincinnatiensis | 594, Legionella dumoffii | 595, Legionella erythra | 596, Legionella feelei | 597, Legionella geestiae | 598, Legionella gormanii | 599, Legionella hackeliae | 600, Legionella israelensis | 601, Legionella jamestowniensis | 602, Legionella jordanis | 603, Legionella londoniensis | 604, Legionella longbeachae | 605, Legionella maceachernii | 606, Legionella micdadei | 607, Legionella moravica | 608, Legionella nautarum | 609, Legionella oakridgensis | 610, Legionella parisiensis | 611, Legionella pneumophila | 612, Legionella quateriensis | 613, Legionella quinlivanii | 614, Legionella rubrilucens | 615, Legionella sainthelensii | 616, Legionella santicrucis | 617, Legionella shakespeareii | 618, Legionella spiritensis | 619, Legionella steigerwaltii | 620, Legionella tucsonensis | 621, Legionella wadsworthii | 622, Legionella worsliensis | 623, Legionella spp. | 624, Leifsonia aquatica | 625, Leifsonia spp. | 626, Leminorella grimontii | 627, Leminorella richardii | 628, Leminorella spp. | 629, Leptospira interrogans | 630, Leptospira spp. | 631, Leptotrichia buccalis | 632, Leptotrichia spp. | 633, Leuconostoc citreum | 634, Leuconostoc lactis | 635, Leuconostoc mesenteroides | 636, Leuconostoc pseudomesenteroides | 637, Leuconostoc spp. | 638, Listeria grayi | 639, Listeria innocua | 640, Listeria monocytogenes | 641, Listeria murrayi | 642, Listeria seeligeri | 643, Listeria spp. | 644, Macrococcus caseolyticus | 645, Macrococcus spp. | 646, Malassezia furfur | 647, Malassezia pachydermatis | 648, Malassezia spp. | 649, Measles virus | 650, Morbillivirus spp. | 651, Megasphaera elsdenii | 652, Megasphaera spp. | 653, MERS-CoV | 654, Coronavirus spp. | 655, Methylobacterium mesophilicum | 656, Methylobacterium thiocyanatum | 657, Methylobacterium spp. | 658, Microbacterium arborescens | 659, Microbacterium spp. | 660, Micrococcus luteus | 661, Micrococcus lylae | 662, Micrococcus spp. | 663, Mitsuokella dentalis | 664, Mitsuokella multiacidus | 665, Mitsuokella spp. | 666, Mobiluncus curtisii | 667, Mobiluncus mulieris | 668, Mobiluncus spp. | 669, Moellerella wisconsensis | 670, Moellerella spp. | 671, Mogibacterium timidum | 672, Mogibacterium spp. | 673, Moraxella atlantae | 674, Moraxella bovis | 675, Moraxella lacunata | 676, Moraxella nonliquefaciens | 677, Moraxella osloensis | 678, Moraxella phenylpyruvica | 679, Moraxella spp. | 680, Morganella morganii | 681, Morganella morganii biogroup 1 | 682, Morganella morganii ssp. sibonii | 683, Morganella spp. | 684, Mucor ramosissimous | 685, Mucor spp. | 686, Mycobacterium abscessus | 687, Mycobacterium africanum | 688, Mycobacterium alvei | 689, Mycobacterium arupense | 690, Mycobacterium asiaticum | 691, Mycobacterium aurum | 692, Mycobacterium avium | 693, Mycobacterium avium complex (MAC) | 694, Mycobacterium bolettii | 695, Mycobacterium bovis | 696, Mycobacterium canetti | 697, Mycobacterium chelonae | 698, Mycobacterium chimaera | 699, Mycobacterium columbiense | 700, Mycobacterium confluentis | 701, Mycobacterium cosmeticum | 702, Mycobacterium flavescens | 703, Mycobacterium fortuitum | 704, Mycobacterium gastri | 705, Mycobacterium genavense | 706, Mycobacterium goodii | 707, Mycobacterium gordonae | 708, Mycobacterium haemophilum | 709, Mycobacterium immunogenum | 710, Mycobacterium intracellulare | 711, Mycobacterium kansasii | 712, Mycobacterium leprae | 713, Mycobacterium mageritense | 714, Mycobacterium malmoense | 715, Mycobacterium marinum | 716, Mycobacterium massiliense | 717, Mycobacterium microti | 718, Mycobacterium mucogenicum | 719, Mycobacterium nonchromogenicum | 720, Mycobacterium parafortuitum | 721, Mycobacterium parascrofulaceum | 722, Mycobacterium peregrinum | 723, Mycobacterium phlei | 724, Mycobacterium phocaicum | 725, Mycobacterium porcinum | 726, Mycobacterium scrofulaceum | 727, Mycobacterium senegalense | 728, Mycobacterium septicum | 729, Mycobacterium shimoidei | 730, Mycobacterium simiae | 731, Mycobacterium smegmatis | 732, Mycobacterium szulgai | 733, Mycobacterium terrae | 734, Mycobacterium thermoresistibile | 735, Mycobacterium triviale | 736, Mycobacterium tuberculosis | 737, Mycobacterium tuberculosis complex | 738, Mycobacterium ulcerans | 739, Mycobacterium vaccae | 740, Mycobacterium wolinskyi | 741, Mycobacterium xenopi | 742, Mycobacterium spp. | 743, Mycoplasma buccale | 744, Mycoplasma faucium | 745, Mycoplasma fermentans | 746, Mycoplasma genitalium | 747, Mycoplasma hominis | 748, Mycoplasma lipophilum | 749, Mycoplasma orale | 750, Mycoplasma penetrans | 751, Mycoplasma pneumoniae | 752, Mycoplasma primatum | 753, Mycoplasma salivarium | 754, Mycoplasma spermatophilum | 755, Mycoplasma spp. | 756, Myroides odoratus | 757, Myroides spp. | 758, Naegleria fowleri | 759, Naegleria spp. | 760, Neisseria canis | 761, Neisseria cinerea | 762, Neisseria elongata | 763, Neisseria flavescens | 764, Neisseria gonorrhoeae | 765, Neisseria lactamica | 766, Neisseria meningitidis | 767, Neisseria mucosa | 768, Neisseria parelongata | 769, Neisseria polysaccharea | 770, Neisseria sicca | 771, Neisseria subflava | 772, Neisseria spp. | 773, Nocardia asteroides | 774, Nocardia brasiliensis | 775, Nocardia otitis caviarum | 776, Nocardia spp. | 777, NONE IDENTIFIED | 778, Obesumbacterium Biogroup 2 | 779, Obesumbacterium spp. | 780, Ochrobactrum anthropi | 781, Ochrobactrum spp. | 782, Oerskovia turbata | 783, Oerskovia xanthineolytica | 784, Oerskovia spp. | 785, Oligella ureolytica | 786, Oligella urethralis | 787, Oligella spp. | 788, Orientia tsutsugamushi | 789, Orientia spp. | 790, Paecilomyces lilacinus | 791, Purpureocillium spp. | 792, Paenibacillus alvei | 793, Paenibacillus macerans | 794, Paenibacillus polymyxa | 795, Paenibacillus spp. | 796, Pantoea agglomerans | 797, Pantoea dispersa | 798, Pantoea septica | 799, Pantoea spp. | 800, Paracoccus yeei | 801, Paracoccus spp. | 802, Parvimonas micra | 803, Peptostreptococcus spp. | 804, Pasteurella aerogenes | 805, Pasteurella bettyae | 806, Pasteurella canis | 807, Pasteurella dagmatis | 808, Pasteurella gallinarum | 809, Pasteurella haemolytica | 810, Pasteurella multocida | 811, Pasteurella pneumotropica | 812, Pasteurella spp. | 813, Pediococcus acidilactici | 814, Pediococcus pentosaceus | 815, Pediococcus spp. | 816, Penicillium chrysogenum | 817, Penicillium spp. | 818, Peptococcus niger | 819, Peptococcus spp. | 820, Peptostreptococcus anaerobius | 821, Peptostreptococcus asaccharolyticus | 822, Peptostreptococcus hydrogenalis | 823, Peptostreptococcus indolicus | 824, Peptostreptococcus lacrimalis | 825, Peptostreptococcus lactolyticus | 826, Peptostreptococcus magnus | 827, Peptostreptococcus parvulus | 828, Peptostreptococcus prevotii | 829, Peptostreptococcus productus | 830, Peptostreptococcus tetradius | 831, Peptostreptococcus vaginalis | 832, Peptostreptococcus spp. | 833, Phaeococcomyces exophialae | 834, Phaeococcomyces spp. | 835, Phialemoniopsis pluiroculosa | 836, Phialemoniopsis spp. | 837, Photobacterium damselae subsp damselae | 838, Photobacterium spp. | 839, Pichia anomala | 840, Pichia farinosa | 841, Pichia ohmeri | 842, Pichia polymorpha | 843, Pichia spp. | 844, Plasmodium falciparum | 845, Plasmodium malariae | 846, Plasmodium ovale | 847, Plasmodium vivax | 848, Plasmodium spp. | 849, Poliovirus | 850, Porphyromonas asaccharolytica | 851, Porphyromonas endodontalis | 852, Porphyromonas gingivalis | 853, Porphyromonas levii | 854, Porphyromonas salivosa | 855, Porphyromonas spp. | 856, Poxviridae molluscum contagiosum | 857, Poxviridae Orthopoxvirus | 858, Poxviridae spp. | 859, Pragia fontium | 860, Pragia spp. | 861, Prevotella bivia | 862, Prevotella buccae | 863, Prevotella buccalis | 864, Prevotella corporis | 865, Prevotella dentalis | 866, Prevotella denticola | 867, Prevotella disiens | 868, Prevotella heparinolytica | 869, Prevotella intermedia | 870, Prevotella loescheii | 871, Prevotella melaninogenica | 872, Prevotella nigrescens | 873, Prevotella oralis | 874, Prevotella oris | 875, Prevotella oulorum | 876, Prevotella ruminicola | 877, Prevotella veroralis | 878, Prevotella zoogleoformans | 879, Prevotella spp. | 880, Prion | 881, Propionibacterium acnes | 882, Propionibacterium avidum | 883, Propionibacterium granulosum | 884, Propionibacterium lymphophilum | 885, Propionibacterium propionicum | 886, Propionibacterium spp. | 887, Proteus hauseri | 888, Proteus mirabilis | 889, Proteus myxofaciens | 890, Proteus penneri | 891, Proteus vulgaris | 892, Proteus spp. | 893, Prototheca wickerhamii | 894, Prototheca zopfii | 895, Prototheca spp. | 896, Providencia alcalifaciens | 897, Providencia heimbachae | 898, Providencia rettgeri | 899, Providencia rustigianii | 900, Providencia stuartii | 901, Providencia spp. | 902, Pseudallescheria boydii | 903, Pseudallescheria spp. | 904, Pseudomonas aeruginosa | 905, Pseudomonas alcaligenes | 906, Pseudomonas chlororaphis | 907, Pseudomonas delafieldii | 908, Pseudomonas diminuta | 909, Pseudomonas fluorescens | 910, Pseudomonas mendocina | 911, Pseudomonas oryzihabitans | 912, Pseudomonas otitidis | 913, Pseudomonas pertucigena | 914, Pseudomonas pickettii | 915, Pseudomonas proteolytica | 916, Pseudomonas pseudoalcaligenes | 917, Pseudomonas putida | 918, Pseudomonas sp. group 1 | 919, Pseudomonas stutzeri | 920, Pseudomonas thomasii | 921, Pseudomonas vesicularis | 922, Pseudomonas-like group 2 | 923, Pseudomonas spp. | 924, Pseudoramibacter alactolyticus | 925, Pseudoramibacter spp. | 926, Psychrobacter immobilis | 927, Psychrobacter spp. | 928, Purpureocillium lilacinum | 929, Purpureocillium spp. | 930, Rabies Lyssavirus | 931, Lyssavirus spp. | 932, Rahnella aquatilis | 933, Rahnella spp. | 934, Ralstonia insidiosa | 935, Ralstonia mannitolilytica | 936, Ralstonia paucula | 937, Ralstonia pickettii | 938, Ralstonia spp. | 939, Raoultella ornithinolytica | 940, Raoultella planticola | 941, Raoultella terrigena | 942, Raoultella spp. | 943, Reovirus reovirus, types 1 2 | 944, Reovirus spp. | 945, Respiratory syncytial virus | 946, Orthopneumovirus spp. | 947, Rhinovirus | 948, Rhizobium radiobacter | 949, Rhizopus oligosporus | 950, Rhizopus spp. | 951, Rhodococcus equi | 952, Rhodococcus spp. | 953, Rhodotorula glutinis | 954, Rhodotorula minuta | 955, Rhodotorula pilimanae | 956, Rhodotorula rubra | 957, Rhodotorula spp. | 958, Rickettsia akari | 959, Rickettsia conorii | 960, Rickettsia prowazeki | 961, Rickettsia rickettsii | 962, Rickettsia tsutsugamushi | 963, Rickettsia typhi | 964, Rickettsia spp. | 965, Rochalimaea henselae | 966, Rochalimaea quintana | 967, Rochalimaea vinsonii | 968, Rochalimaea spp. | 969, Roseomonas gilardii | 970, Roseomonas mucosa | 971, Roseomonas spp. | 972, Rothia dentocariosa | 973, Rothia mucilaginosa | 974, Rothia spp. | 975, Ruminococcus hansenii | 976, Ruminococcus productus | 977, Ruminococcus spp. | 978, Saccharomyces cerevisiae | 979, Saccharomyces spp. | 980, Salmonella agbeni | 981, Salmonella agona | 982, Salmonella arizonae | 983, Salmonella braenderup | 984, Salmonella choleraesuis | 985, Salmonella corvallis | 986, Salmonella dublin | 987, Salmonella enterica | 988, Salmonella enteritidis | 989, Salmonella group A | 990, Salmonella group B | 991, Salmonella group C1 | 992, Salmonella group C2 | 993, Salmonella group D | 994, Salmonella group E | 995, Salmonella heidelberg | 996, Salmonella infantis | 997, Salmonella meleagridis | 998, Salmonella montevideo | 999, Salmonella newport | 1000, Salmonella oranienburg | 1001, Salmonella panama | 1002, Salmonella paratyphi A | 1003, Salmonella paratyphi B | 1004, Salmonella paratyphi C | 1005, Salmonella poona | 1006, Salmonella rissen | 1007, Salmonella saint-paul | 1008, Salmonella subgroup 2, subgenus II | 1009, Salmonella subgroup 3a, Arizona-monopha | 1010, Salmonella subgroup 3b, Arizona-diphasi | 1011, Salmonella subgroup 4, subgenus IV | 1012, Salmonella subgroup 5, subgenus V | 1013, Salmonella typhi | 1014, Salmonella typhimurium | 1015, Salmonella spp. | 1016, Sarcinosporon inkin | 1017, Sarcinosporon spp. | 1018, Sarcoptes scabiei (scabies) | 1019, Sarcoptes spp. | 1020, Scedosporium spp. | 1021, Scedosporium spp. | 1022, Selenomonas artemidis | 1023, Selenomonas dianae | 1024, Selenomonas flueggei | 1025, Selenomonas infelix | 1026, Selenomonas noxia | 1027, Selenomonas sputigena | 1028, Selenomonas spp. | 1029, Serpulina jonesii | 1030, Serpulina spp. | 1031, Serratia entomophila | 1032, Serratia ficaria | 1033, Serratia fonticola | 1034, Serratia grimesii | 1035, Serratia liquefaciens | 1036, Serratia marcescens | 1037, Serratia odorifera | 1038, Serratia plymuthica | 1039, Serratia proteamaculans | 1040, Serratia rubidaea | 1041, Serratia spp. | 1042, Shewanella putrefaciens | 1043, Shewanella spp. | 1044, Shigella Group A | 1045, Shigella Group B | 1046, Shigella Group C | 1047, Shigella Group D | 1048, Shigella spp. | 1049, Sphingobacterium mizutii | 1050, Sphingobacterium multivorum | 1051, Sphingobacterium spiritivorum | 1052, Sphingobacterium thalpophylum | 1053, Sphingobacterium yabuuchiae | 1054, Sphingobacterium spp. | 1055, Sphingomonas mucosissima | 1056, Sphingomonas paucimobilis | 1057, Sphingomonas spp. | 1058, Spirillum minus | 1059, Spirillum spp. | 1060, Sporobolomyces salmonicolor | 1061, Sporobolomyces spp. | 1062, Sporothrix schenckii | 1063, Sporothrix spp. | 1064, Staphylococcus arlettae | 1065, Staphylococcus aureus | 1066, Staphylococcus capitis | 1067, Staphylococcus caprae | 1068, Staphylococcus carnosus | 1069, Staphylococcus chromogenes | 1070, Staphylococcus coagulans | 1071, Staphylococcus coagulase positive | 1072, Staphylococcus cohnii | 1073, Staphylococcus epidermidis | 1074, Staphylococcus equorum | 1075, Staphylococcus hominis | 1076, Staphylococcus hyicus | 1077, Staphylococcus intermedius | 1078, Staphylococcus kloosii | 1079, Staphylococcus schleiferi | 1080, Staphylococcus spp. | 1081, Stenotrophomonas maltophilia | 1082, Stenotrophomonas spp. | 1083, Stomatococcus mucilaginosus | 1084, Stomatococcus spp. | 1085, Streptobacillus moniliformis | 1086, Streptobacillus spp. | 1087, Streptococcus acidominimus | 1088, Streptococcus adjacens | 1089, Streptococcus agalactiae | 1090, Streptococcus alpha-hemolytic | 1091, Streptococcus anginosus | 1092, Streptococcus anginosus group | 1093, Streptococcus beta-hemolytic | 1094, Streptococcus bovis | 1095, Streptococcus constellatus | 1096, Streptococcus crista | 1097, Streptococcus D unspecified, non-entero | 1098, Streptococcus defectivus | 1099, Streptococcus dysgalactiae | 1100, Streptococcus equi | 1101, Streptococcus equinus | 1102, Streptococcus gamma-hemolytic | 1103, Streptococcus gordonii | 1104, Streptococcus group C | 1105, Streptococcus group E | 1106, Streptococcus group F | 1107, Streptococcus group G | 1108, Streptococcus hansenii | 1109, Streptococcus iniae | 1110, Streptococcus intermedius | 1111, Streptococcus mitis | 1112, Streptococcus mitis group | 1113, Streptococcus mutans | 1114, Streptococcus oralis | 1115, Streptococcus parasanguis | 1116, Streptococcus pleomorphus, anaerobic | 1117, Streptococcus pneumoniae | 1118, Streptococcus pyogenes | 1119, Streptococcus salivarius | 1120, Streptococcus sanguis | 1121, Streptococcus sanguis II | 1122, Streptococcus sobrinus | 1123, Streptococcus uberis | 1124, Streptococcus vestibularis | 1125, Streptococcus viridans spp. | 1126, Streptococcus alpha non hemolytic | 1127, Streptococcus non-group A non-group B, beta-hemolytic | 1128, Streptococcus spp. | 1129, Suttonella indologenes | 1130, Suttonella spp. | 1131, Tatlockia macaechernii | 1132, Tatlockia micdadei | 1133, Tatlockia spp. | 1134, Tatumella ptyseos | 1135, Tatumella spp. | 1136, Tissierella praeacuta | 1137, Tissierella spp. | 1138, Togavirus dengue | 1139, Togavirus Eastern equine encephalitis | 1140, Togavirus tick-borne encephalitis | 1141, Togavirus spp. | 1142, Trichosporon asahii | 1143, Trichosporon beigelii | 1144, Trichosporon mucoides | 1145, Trichosporon pullulans | 1146, Trichosporon spp. | 1147, Trypanosoma brucei | 1148, Trypanosoma cruzi | 1149, Trypanosoma Trypan-Afr | 1150, Trypanosoma Trypan-Chag | 1151, Trypanosoma spp. | 1152, Tsukamurella pulmonis | 1153, Tsukamurella spp. | 1154, Ureaplasma urealyticum | 1155, Ureaplasma spp. | 1156, Varicella-zoster virus | 1157, Varicellovirus spp. | 1158, Veillonella parvula | 1159, Veillonella spp. | 1160, Vermamoeba vermiformis | 1161, Hartmannella spp. | 1162, Vibrio alginolyticus | 1163, Vibrio cholerae | 1164, Vibrio cincinnatiensis | 1165, Vibrio damsela | 1166, Vibrio fluvialis | 1167, Vibrio furnissii | 1168, Vibrio harveyi | 1169, Vibrio hollisae | 1170, Vibrio metschnikovii | 1171, Vibrio mimicus | 1172, Vibrio parahaemolyticus | 1173, Vibrio vulnificus | 1174, Vibrio spp. | 1175, Virgibacillus pantothenticus | 1176, Virgibacillus spp. | 1177, Weeksella virosa | 1178, Weeksella zoohelcum | 1179, Weeksella spp. | 1180, Wolinella succinogenes | 1181, Wolinella spp. | 1182, Xenorhabdus luminescens | 1183, Xenorhabdus nematophilus | 1184, Xenorhabdus spp. | 1185, Yersinia aldovae | 1186, Yersinia bercovieri | 1187, Yersinia enterocolitica | 1188, Yersinia frederiksenii | 1189, Yersinia intermedia | 1190, Yersinia kristensenii | 1191, Yersinia mollaretii | 1192, Yersinia pestis | 1193, Yersinia pseudotuberculosis | 1194, Yersinia rohdei | 1195, Yersinia ruckeri | 1196, Yersinia spp. | 1197, Yokenella regensburgei (Koserella trabulsii) | 1198, Yokenella spp. (Koserella spp.) | 1199, Zika virus | 1200, Flavivirus spp.",,autocomplete,,,,[another_pathogen_yesno_2]=1,,,,,,
type_of_positive_test_2,hai_standardized_variable_list_outbreak_only,,checkbox,"Pathogen 2: Type of positive test(s)","1, PCR | 2, Cultures | 3, Antigen | 4, Titers | 5, Microscopy","Check all that apply.",,,,,[another_pathogen_yesno_2]=1,,,,,,
number_of_positive_tests_2,hai_standardized_variable_list_outbreak_only,,text,"Pathogen 2: Total number of positive tests",,"Indicate the number of positive tests for each test type reported.",,,,,[another_pathogen_yesno_2]=1,,,,,,
path_positive_test_notes_2,hai_standardized_variable_list_outbreak_only,,text,"Pathogen 2: Positive test notes",,"Include additional information if applicable (e.g., the exact number of tests per test type).",,,,,[another_pathogen_yesno_2]=1,,,,,,
another_pathogen_yesno_3,hai_standardized_variable_list_outbreak_only,,yesno,"Another pathogen involved?",,,,,,,[another_pathogen_yesno_2]=1,,,,,,
pathogen_3,hai_standardized_variable_list_outbreak_only,,dropdown,"Pathogen 3:","1, Acanthamoeba keratitis | 2, Acanthamoeba spp. | 3, Achromobacter xylosoxidans | 4, Achromobacter spp. | 5, Acidaminococcus fermentans | 6, Acidaminococcus spp. | 7, Acidovorax delafieldii | 8, Acidovorax spp. | 9, Acinetobacter baumannii | 10, Acinetobacter calcoaceticus | 11, Acinetobacter genospecies 3 | 12, Acinetobacter guillouiae | 13, Acinetobacter haemolyticus | 14, Acinetobacter johnsonii | 15, Acinetobacter junii | 16, Acinetobacter lwoffii | 17, Acinetobacter pittii | 18, Acinetobacter proteolyticus | 19, Acinetobacter radioreisistens | 20, Acinetobacter spp. | 21, Actinobacillus actinomycetemcomitans | 22, Actinobacillus equuli | 23, Actinobacillus lignieresii | 24, Actinobacillus suis | 25, Actinobacillus ureae | 26, Actinobacillus spp. | 27, Actinomyces bovis | 28, Actinomyces georgiae | 29, Actinomyces gerencseriae | 30, Actinomyces israelii | 31, Actinomyces meyeri | 32, Actinomyces naeslundii | 33, Actinomyces odontolyticus | 34, Actinomyces pyogenes | 35, Actinomyces viscosus | 36, Actinomyces spp. | 37, Adenovirus | 38, Adenoviridae spp. | 39, Aerococcus christensenii | 40, Aerococcus spp. | 41, Aeromonas caviae | 42, Aeromonas hydrophila | 43, Aeromonas jandaei | 44, Aeromonas media | 45, Aeromonas punctata | 46, Aeromonas salmonicida | 47, Aeromonas schubertii | 48, Aeromonas sobria | 49, Aeromonas trota | 50, Aeromonas veronii | 51, Aeromonas spp. | 52, Agrobacterium radiobacter | 53, Agrobacterium tumefaciens | 54, Agrobacterium spp. | 55, Alcaligenes faecalis | 56, Alcaligenes piechaudii | 57, Alcaligenes xylosoxidans | 58, Alcaligenes spp. | 59, Anaerobiospirillum succiniciproducens | 60, Anaerobiospirillum spp. | 61, Anaerococcus lactolyticus | 62, Anaerococcus prevotii | 63, Anaerococcus tretradius | 64, Anaerococcus vaginalis | 65, Anaerococcus spp. | 66, Anaerorhabdus furcosus | 67, Anaerorhabdus spp. | 68, Andes virus | 69, Orthohantavirus spp. | 70, Apophysomyces elegans | 71, Apophysomyces spp. | 72, Arcanobacterium haemolyticum | 73, Arcanobacterium pyogenes | 74, Arcanobacterium spp. | 75, Arcobacter cryaerophilus | 76, Arcobacter nitrofigilis | 77, Arcobacter spp. | 78, Aspergillus flavus | 79, Aspergillus fumigatus | 80, Aspergillus niger | 81, Aspergillus oryzae | 82, Aspergillus spp. | 83, Atopobium minutum | 84, Atopobium parvulum | 85, Atopobium rimae | 86, Atopobium spp. | 87, Aureobasidium pullulans | 88, Aureobasidium spp. | 89, Babesia microti | 90, Babesia spp. | 91, Bacillus anthracis | 92, Bacillus cereus | 93, Bacillus circulans | 94, Bacillus coagulans | 95, Bacillus firmus | 96, Bacillus lentus | 97, Bacillus licheniformis | 98, Bacillus megaterium | 99, Bacillus pumilus | 100, Bacillus sphaericus | 101, Bacillus stearothermophilus | 102, Bacillus subtilis | 103, Bacillus subtilis group | 104, Bacillus thuringiensis | 105, Bacillus spp. | 106, Bacteroides caccae | 107, Bacteroides capillosus | 108, Bacteroides coagulans | 109, Bacteroides distasonis | 110, Bacteroides eggerthii | 111, Bacteroides forsythus | 112, Bacteroides gracilis | 113, Bacteroides levii | 114, Bacteroides merdae | 115, Bacteroides ovatus | 116, Bacteroides pneumosintes | 117, Bacteroides putredinis | 118, Bacteroides splanchnicus | 119, Bacteroides stercoris | 120, Bacteroides tectum | 121, Bacteroides thetaiotaomicron | 122, Bacteroides uniformis | 123, Bacteroides ureolyticus | 124, Bacteroides vulgatus | 125, Bacteroides spp. | 126, Bartonella bacilliformis | 127, Bartonella henselae | 128, Bartonella quintana | 129, Bartonella vinsonii | 130, Bartonella spp. | 131, Bifidobacterium bifidum | 132, Bifidobacterium breve | 133, Bifidobacterium dentium | 134, Bifidobacterium infantis | 135, Bifidobacterium longum | 136, Bifidobacterium spp. | 137, Bilophila wadsworthia | 138, Bilophila spp. | 139, Bipolaris spicifera | 140, Bipolaris spp. | 141, Blastomyces dermatitidis | 142, Blastomyces spp. | 143, Bordetella avium | 144, Bordetella bronchiseptica | 145, Bordetella parapertussis | 146, Bordetella pertussis | 147, Bordetella spp. | 148, Borrelia burgdorferi | 149, Borrelia garinii | 150, Borrelia hermsii | 151, Borrelia parkeri | 152, Borrelia recurrentis | 153, Borrelia turicatae | 154, Borrelia spp. | 155, Brevibacillus brevis | 156, Brevibacillus laterosporus | 157, Brevibacillus spp. | 158, Brevibacterium casei | 159, Brevibacterium epidermidis | 160, Brevibacterium spp. | 161, Brevundimonas diminuta | 162, Brevundimonas vesicularis | 163, Brevundimonas spp. | 164, Brucella abortus | 165, Brucella canis | 166, Brucella melitensis | 167, Brucella suis | 168, Brucella spp. | 169, Budvicia aquatiqua | 170, Budvicia spp. | 171, Bunyavirus California encephalitis group | 172, Bunyavirus Crimean-Congo hemorrhagic | 173, Bunyavirus Rift Valley fever | 174, Bunyavirus spp. | 175, Burkholderia cenocepacia | 176, Burkholderia cepacia | 177, Burkholderia contaminans | 178, Burkholderia gladioli | 179, Burkholderia mallei | 180, Burkholderia multivorans | 181, Burkholderia pickettii | 182, Burkholderia pseudomallei | 183, Burkholderia stabilis | 184, Burkholderia spp. | 185, Buttiauxella agrestis | 186, Buttiauxella noackiae | 187, Buttiauxella spp. | 188, Calymmatobacterium granulomatis | 189, Calymmatobacterium spp. | 190, Campylobacter coli | 191, Campylobacter concisus | 192, Campylobacter cryaerophila | 193, Campylobacter curvus | 194, Campylobacter fetus | 195, Campylobacter gracilis | 196, Campylobacter hyointestinalis | 197, Campylobacter jejuni | 198, Campylobacter lari | 199, Campylobacter mucosalis | 200, Campylobacter rectus | 201, Campylobacter sputorum | 202, Campylobacter spp. | 203, Candida albicans | 204, Candida auris | 205, Candida catenulata | 206, Candida ciferrii | 207, Candida dubliniensis | 208, Candida duobushaemulonii | 209, Candida famata | 210, Candida glabrata | 211, Candida guilliermondi | 212, Candida haemulonii | 213, Candida inconspicua | 214, Candida intermedia | 215, Candida kefyr | 216, Candida krusei | 217, Candida lambica | 218, Candida lipolytica | 219, Candida lusitaniae | 220, Candida metapsilosis | 221, Candida norvegensis | 222, Candida parapsilosis | 223, Candida pelliculosa | 224, Candida pintolopesii | 225, Candida pseudotropicalis | 226, Candida pulcherrima | 227, Candida rugosa | 228, Candida stellatoidea | 229, Candida tropicalis | 230, Candida utilis | 231, Candida vini | 232, Candida viswanathii | 233, Candida zeylanoides | 234, Candida spp. | 235, Capnocytophaga canimorsus | 236, Capnocytophaga gingivalis | 237, Capnocytophaga ochracea | 238, Capnocytophaga sputigena | 239, Capnocytophaga spp. | 240, Cardiobacterium hominis | 241, Cardiobacterium spp. | 242, Cedecea davisae | 243, Cedecea lapagei | 244, Cedecea neteri | 245, Cedecea species 3 | 246, Cedecea species 5 | 247, Cedecea spp. | 248, Centipeda periodontii | 249, Centipeda spp. | 250, Chlamydia pneumoniae | 251, Chlamydia psittaci | 252, Chlamydia trachomatis | 253, Chlamydia spp. | 254, Chromobacterium violaceum | 255, Chromobacterium spp. | 256, Chryseobacterium gleum | 257, Chryseobacterium indologenes | 258, Chryseobacterium meningosepticum | 259, Chryseobacterium spp. | 260, Chryseomonas luteola | 261, Chryseomonas spp. | 262, Citrobacter amalonaticus | 263, Citrobacter braakii | 264, Citrobacter farmeri | 265, Citrobacter freundii | 266, Citrobacter sedlakii | 267, Citrobacter werkmanii | 268, Citrobacter youngae | 269, Citrobacter spp. | 270, Clostridium absonum | 271, Clostridium argentinense | 272, Clostridium baratii | 273, Clostridium bifermentans | 274, Clostridium botulinum | 275, Clostridium butyricum | 276, Clostridium cadaveris | 277, Clostridium carnis | 278, Clostridium clostridioforme | 279, Clostridium cochlearium | 280, Clostridium difficile | 281, Clostridium fallax | 282, Clostridium ghonii | 283, Clostridium glycolicum | 284, Clostridium haemolyticum | 285, Clostridium hastiforme | 286, Clostridium histolyticum | 287, Clostridium indolis | 288, Clostridium innocuum | 289, Clostridium irregulare | 290, Clostridium limosum | 291, Clostridium malenominatum | 292, Clostridium novyi type A | 293, Clostridium oroticum | 294, Clostridium paraputrificum | 295, Clostridium perfringens | 296, Clostridium putrefaciens | 297, Clostridium putrificum | 298, Clostridium ramosum | 299, Clostridium sardiniense | 300, Clostridium septicum | 301, Clostridium sordellii | 302, Clostridium sphenoides | 303, Clostridium sporogenes | 304, Clostridium subterminale | 305, Clostridium symbiosum | 306, Clostridium tertium | 307, Clostridium tetani | 308, Clostridium villosum | 309, Clostridium spp. | 310, Coccidioides immitis | 311, Coccidioides spp. | 312, Collinsella aerofaciens | 313, Collinsella spp. | 314, Comamonas acidovorans | 315, Comamonas terrigena | 316, Comamonas testosteroni | 317, Comamonas spp. | 318, Corynebacterium aquaticum | 319, Corynebacterium bovis | 320, Corynebacterium cystidis | 321, Corynebacterium diphtheriae | 322, Corynebacterium glutamicum | 323, Corynebacterium group G-2 | 324, Corynebacterium jeikeium | 325, Corynebacterium kutscheri | 326, Corynebacterium matruchotii | 327, Corynebacterium minutissimum | 328, Corynebacterium mycetoides | 329, Corynebacterium pilosum | 330, Corynebacterium pseudodiphteriticum | 331, Corynebacterium pseudotuberculosis | 332, Corynebacterium renale | 333, Corynebacterium striatum | 334, Corynebacterium ulcerans | 335, Corynebacterium urealyticum | 336, Corynebacterium xerosis | 337, Corynebacterium spp. | 338, Coxiella burnetii | 339, Coxiella spp. | 340, CRE unspecified | 341, Cronobacter dublinensis | 342, Cronobacter malonaticus | 343, Cronobacter muytjensii | 344, Cronobacter sakazakii | 345, Cronobacter turicensis | 346, Cronobacter spp. | 347, Cryptococcus albidus | 348, Cryptococcus humicola | 349, Cryptococcus laurentii | 350, Cryptococcus luteolus | 351, Cryptococcus neoformans | 352, Cryptococcus terreus | 353, Cryptococcus uniguttulatus | 354, Cryptococcus spp. | 355, Cupriavidus alkaliphilus | 356, Cupriavidus pauculus | 357, Cupriavidus spp. | 358, Curvularia lunata | 359, Curvularia spp. | 360, Delftia acidovorans | 361, Delftia spp. | 362, Dermacoccus nishionmiyeaensis | 363, Dermacoccus spp. | 364, Desulfomonas pigra | 365, Desulfomonas spp. | 366, Desulfovibrio desulfuricans | 367, Desulfovibrio spp. | 368, Dichelobacter nodosus | 369, Dichelobacter spp. | 370, Edwardsiella hoshinae | 371, Edwardsiella ictaluri | 372, Edwardsiella tarda | 373, Edwardsiella spp. | 374, Eikenella corrodens | 375, Eikenella spp. | 376, Elizabethkingia anopheles | 377, Elizabethkingia meningoseptica | 378, Elizabethkingia spp. | 379, Empedobacter brevis | 380, Empedobacter spp. | 381, Entamoeba coli | 382, Entamoeba histolytica | 383, Entamoeba spp. | 384, Enterobacter aerogenes | 385, Enterobacter agglomerans group | 386, Enterobacter amnigenus | 387, Enterobacter asburiae | 388, Enterobacter cancerogenus | 389, Enterobacter cloacae complex | 390, Enterobacter gergoviae | 391, Enterobacter hormaechei | 392, Enterobacter intermedium | 393, Enterobacter kobei | 394, Enterobacter sakazakii | 395, Enterobacter taylorae | 396, Enterobacter spp. | 397, Enterococcus avium | 398, Enterococcus casseliflavus | 399, Enterococcus dispar | 400, Enterococcus durans | 401, Enterococcus faecalis | 402, Enterococcus faecium | 403, Enterococcus flavescens | 404, Enterococcus gallinarum | 405, Enterococcus hirae | 406, Enterococcus malodoratus | 407, Enterococcus mundtii | 408, Enterococcus pseudoavium | 409, Enterococcus raffinosus | 410, Enterococcus solitarius | 411, Enterococcus spp. | 412, Enterovirus EV-D68 | 413, Enterovirus spp. | 414, Erysipelothrix rhusiopathiae | 415, Erysipelothrix spp. | 416, Escherichia albertii | 417, Escherichia blattae | 418, Escherichia coli | 419, Escherichia fergusonii | 420, Escherichia hermannii | 421, Escherichia vulneris | 422, Escherichia spp. | 423, Eubacterium aerofaciens | 424, Eubacterium alactolyticum | 425, Eubacterium brachy | 426, Eubacterium combesii | 427, Eubacterium contortum | 428, Eubacterium lentum | 429, Eubacterium limosum | 430, Eubacterium moniliforme | 431, Eubacterium nitrogenes | 432, Eubacterium nodatum | 433, Eubacterium saburreum | 434, Eubacterium sulci | 435, Eubacterium tenue | 436, Eubacterium timidum | 437, Eubacterium yurii | 438, Eubacterium spp. | 439, Ewingella americana | 440, Ewingella spp. | 441, Exophiala dermatitidis | 442, Exophiala spp. | 443, Filifactor alocis | 444, Filifactor villosus | 445, Filifactor spp. | 446, Finegoldia magna | 447, Finegoldia spp. | 448, Flavimonas oryzihabitans | 449, Flavimonas spp. | 450, Flavobacterium breve | 451, Flavobacterium meningosepticum | 452, Flavobacterium odoratum | 453, Flavobacterium sp. group II b | 454, Flavobacterium sp. group II e | 455, Flavobacterium sp. group II h | 456, Flavobacterium sp. group II i | 457, Flavobacterium spp. | 458, Fluoribacter bozemanae | 459, Fluoribacter dumoffii | 460, Fluoribacter spp. | 461, Francisella tularensis | 462, Francisella spp. | 463, Fusarium bubigeum | 464, Fusarium spp. | 465, Fusobacterium alocis | 466, Fusobacterium gonidiaformans | 467, Fusobacterium mortiferum | 468, Fusobacterium naviforme | 469, Fusobacterium necrogenes | 470, Fusobacterium necrophorum | 471, Fusobacterium nucleatum | 472, Fusobacterium periodonticum | 473, Fusobacterium russii | 474, Fusobacterium sulci | 475, Fusobacterium ulcerans | 476, Fusobacterium varium | 477, Fusobacterium spp. | 478, Gardnerella vaginalis | 479, Gardnerella spp. | 480, Gemella haemolysans | 481, Gemella morbillorum | 482, Gemella spp. | 483, Geotrichum candidum | 484, Geotrichum spp. | 485, Group A Streptococcus | 486, Group B Streptococcus | 487, Streptococcus spp. | 488, Haemophilus actinomycetemcomitans | 489, Haemophilus aphrophilus | 490, Haemophilus ducreyi | 491, Haemophilus haemolyticus | 492, Haemophilus influenzae | 493, Haemophilus parahaemolyticus | 494, Haemophilus parainfluenzae | 495, Haemophilus paraphrophilus | 496, Haemophilus spp. | 497, Hafnia alvei | 498, Hafnia alvei biogroup 1 | 499, Hafnia spp. | 500, Helicobacter cinaedi | 501, Helicobacter fennelliae | 502, Helicobacter mustelae | 503, Helicobacter pylori | 504, Helicobacter rappini | 505, Helicobacter spp. | 506, Hepatitis A | 507, Hepatitis B | 508, Hepatitis C | 509, Hepatitis D | 510, Hepatitis E | 511, Hepatovirus spp. | 512, Orthohepadnavirus spp. | 513, Hepacivirus spp. | 514, Deltavirus spp. | 515, Orthohepevirus spp. | 516, Herbaspirillum aquaticum | 517, Herbaspirillum autotrophicu | 518, Herbaspirillum chlorophenolicum | 519, Herbaspirillum frisingense | 520, Herbaspirillum hiltneri | 521, Herbaspirillum huttiense | 522, Herbaspirillum lusitanum | 523, Herbaspirillum massiliense | 524, Herbaspirillum rhizosphaerae | 525, Herbaspirillum rubrisubalbicans | 526, Herbaspirillum seropedicae | 527, Herbaspirillum spp. | 528, Histoplasma capsulatum | 529, Histoplasma spp. | 530, Human immunodeficiency virus | 531, Lentivirus | 532, Human metapneumovirus | 533, Metapneumovirus spp. | 534, Human parainfluenza virus | 535, Paramyxoviridae spp. | 536, Influenza virus | 537, Orthomyxoviridae spp. | 538, Jonesia denitrificans | 539, Jonesia spp. | 540, Kerstersia gyiorum | 541, Kerstersia spp. | 542, Kingella denitrificans | 543, Kingella indologenes | 544, Kingella kingae | 545, Kingella spp. | 546, Klebsiella aerogenes | 547, Klebsiella granulomatis | 548, Klebsiella ornithinolytica | 549, Klebsiella oxytoca | 550, Klebsiella ozaenae | 551, Klebsiella planticola | 552, Klebsiella pneumoniae | 553, Klebsiella rhinoscleromatis | 554, Klebsiella terrigena | 555, Klebsiella spp. | 556, Kluyvera ascorbata | 557, Kluyvera cryocrescens | 558, Kluyvera spp. | 559, Kluyveromyces lactis | 560, Kluyveromyces marxianus | 561, Kluyveromyces spp. | 562, Kocuria kristinae | 563, Kocuria rosea | 564, Kocuria varians | 565, Kocuria spp. | 566, Kurthia bessonii | 567, Kurthia spp. | 568, Kytococcus sedentarius | 569, Kytococcus spp. | 570, Lactobacillus acidophilus | 571, Lactobacillus amylovorus | 572, Lactobacillus brevis | 573, Lactobacillus casei | 574, Lactobacillus catenaforme | 575, Lactobacillus crispatus | 576, Lactobacillus fermentum | 577, Lactobacillus gasseri | 578, Lactobacillus jensenii | 579, Lactobacillus johnsonii | 580, Lactobacillus minutus, anaerobic | 581, Lactobacillus oris | 582, Lactobacillus rimae, anaerobic | 583, Lactobacillus uli, anaerobic | 584, Lactobacillus vaginalis | 585, Lactobacillus spp. | 586, Leclercia adecarboxylata | 587, Leclercia spp. | 588, Legionella anisa | 589, Legionella birminghamensis | 590, Legionella bozemanii | 591, Legionella brunensis | 592, Legionella cherri | 593, Legionella cincinnatiensis | 594, Legionella dumoffii | 595, Legionella erythra | 596, Legionella feelei | 597, Legionella geestiae | 598, Legionella gormanii | 599, Legionella hackeliae | 600, Legionella israelensis | 601, Legionella jamestowniensis | 602, Legionella jordanis | 603, Legionella londoniensis | 604, Legionella longbeachae | 605, Legionella maceachernii | 606, Legionella micdadei | 607, Legionella moravica | 608, Legionella nautarum | 609, Legionella oakridgensis | 610, Legionella parisiensis | 611, Legionella pneumophila | 612, Legionella quateriensis | 613, Legionella quinlivanii | 614, Legionella rubrilucens | 615, Legionella sainthelensii | 616, Legionella santicrucis | 617, Legionella shakespeareii | 618, Legionella spiritensis | 619, Legionella steigerwaltii | 620, Legionella tucsonensis | 621, Legionella wadsworthii | 622, Legionella worsliensis | 623, Legionella spp. | 624, Leifsonia aquatica | 625, Leifsonia spp. | 626, Leminorella grimontii | 627, Leminorella richardii | 628, Leminorella spp. | 629, Leptospira interrogans | 630, Leptospira spp. | 631, Leptotrichia buccalis | 632, Leptotrichia spp. | 633, Leuconostoc citreum | 634, Leuconostoc lactis | 635, Leuconostoc mesenteroides | 636, Leuconostoc pseudomesenteroides | 637, Leuconostoc spp. | 638, Listeria grayi | 639, Listeria innocua | 640, Listeria monocytogenes | 641, Listeria murrayi | 642, Listeria seeligeri | 643, Listeria spp. | 644, Macrococcus caseolyticus | 645, Macrococcus spp. | 646, Malassezia furfur | 647, Malassezia pachydermatis | 648, Malassezia spp. | 649, Measles virus | 650, Morbillivirus spp. | 651, Megasphaera elsdenii | 652, Megasphaera spp. | 653, MERS-CoV | 654, Coronavirus spp. | 655, Methylobacterium mesophilicum | 656, Methylobacterium thiocyanatum | 657, Methylobacterium spp. | 658, Microbacterium arborescens | 659, Microbacterium spp. | 660, Micrococcus luteus | 661, Micrococcus lylae | 662, Micrococcus spp. | 663, Mitsuokella dentalis | 664, Mitsuokella multiacidus | 665, Mitsuokella spp. | 666, Mobiluncus curtisii | 667, Mobiluncus mulieris | 668, Mobiluncus spp. | 669, Moellerella wisconsensis | 670, Moellerella spp. | 671, Mogibacterium timidum | 672, Mogibacterium spp. | 673, Moraxella atlantae | 674, Moraxella bovis | 675, Moraxella lacunata | 676, Moraxella nonliquefaciens | 677, Moraxella osloensis | 678, Moraxella phenylpyruvica | 679, Moraxella spp. | 680, Morganella morganii | 681, Morganella morganii biogroup 1 | 682, Morganella morganii ssp. sibonii | 683, Morganella spp. | 684, Mucor ramosissimous | 685, Mucor spp. | 686, Mycobacterium abscessus | 687, Mycobacterium africanum | 688, Mycobacterium alvei | 689, Mycobacterium arupense | 690, Mycobacterium asiaticum | 691, Mycobacterium aurum | 692, Mycobacterium avium | 693, Mycobacterium avium complex (MAC) | 694, Mycobacterium bolettii | 695, Mycobacterium bovis | 696, Mycobacterium canetti | 697, Mycobacterium chelonae | 698, Mycobacterium chimaera | 699, Mycobacterium columbiense | 700, Mycobacterium confluentis | 701, Mycobacterium cosmeticum | 702, Mycobacterium flavescens | 703, Mycobacterium fortuitum | 704, Mycobacterium gastri | 705, Mycobacterium genavense | 706, Mycobacterium goodii | 707, Mycobacterium gordonae | 708, Mycobacterium haemophilum | 709, Mycobacterium immunogenum | 710, Mycobacterium intracellulare | 711, Mycobacterium kansasii | 712, Mycobacterium leprae | 713, Mycobacterium mageritense | 714, Mycobacterium malmoense | 715, Mycobacterium marinum | 716, Mycobacterium massiliense | 717, Mycobacterium microti | 718, Mycobacterium mucogenicum | 719, Mycobacterium nonchromogenicum | 720, Mycobacterium parafortuitum | 721, Mycobacterium parascrofulaceum | 722, Mycobacterium peregrinum | 723, Mycobacterium phlei | 724, Mycobacterium phocaicum | 725, Mycobacterium porcinum | 726, Mycobacterium scrofulaceum | 727, Mycobacterium senegalense | 728, Mycobacterium septicum | 729, Mycobacterium shimoidei | 730, Mycobacterium simiae | 731, Mycobacterium smegmatis | 732, Mycobacterium szulgai | 733, Mycobacterium terrae | 734, Mycobacterium thermoresistibile | 735, Mycobacterium triviale | 736, Mycobacterium tuberculosis | 737, Mycobacterium tuberculosis complex | 738, Mycobacterium ulcerans | 739, Mycobacterium vaccae | 740, Mycobacterium wolinskyi | 741, Mycobacterium xenopi | 742, Mycobacterium spp. | 743, Mycoplasma buccale | 744, Mycoplasma faucium | 745, Mycoplasma fermentans | 746, Mycoplasma genitalium | 747, Mycoplasma hominis | 748, Mycoplasma lipophilum | 749, Mycoplasma orale | 750, Mycoplasma penetrans | 751, Mycoplasma pneumoniae | 752, Mycoplasma primatum | 753, Mycoplasma salivarium | 754, Mycoplasma spermatophilum | 755, Mycoplasma spp. | 756, Myroides odoratus | 757, Myroides spp. | 758, Naegleria fowleri | 759, Naegleria spp. | 760, Neisseria canis | 761, Neisseria cinerea | 762, Neisseria elongata | 763, Neisseria flavescens | 764, Neisseria gonorrhoeae | 765, Neisseria lactamica | 766, Neisseria meningitidis | 767, Neisseria mucosa | 768, Neisseria parelongata | 769, Neisseria polysaccharea | 770, Neisseria sicca | 771, Neisseria subflava | 772, Neisseria spp. | 773, Nocardia asteroides | 774, Nocardia brasiliensis | 775, Nocardia otitis caviarum | 776, Nocardia spp. | 777, NONE IDENTIFIED | 778, Obesumbacterium Biogroup 2 | 779, Obesumbacterium spp. | 780, Ochrobactrum anthropi | 781, Ochrobactrum spp. | 782, Oerskovia turbata | 783, Oerskovia xanthineolytica | 784, Oerskovia spp. | 785, Oligella ureolytica | 786, Oligella urethralis | 787, Oligella spp. | 788, Orientia tsutsugamushi | 789, Orientia spp. | 790, Paecilomyces lilacinus | 791, Purpureocillium spp. | 792, Paenibacillus alvei | 793, Paenibacillus macerans | 794, Paenibacillus polymyxa | 795, Paenibacillus spp. | 796, Pantoea agglomerans | 797, Pantoea dispersa | 798, Pantoea septica | 799, Pantoea spp. | 800, Paracoccus yeei | 801, Paracoccus spp. | 802, Parvimonas micra | 803, Peptostreptococcus spp. | 804, Pasteurella aerogenes | 805, Pasteurella bettyae | 806, Pasteurella canis | 807, Pasteurella dagmatis | 808, Pasteurella gallinarum | 809, Pasteurella haemolytica | 810, Pasteurella multocida | 811, Pasteurella pneumotropica | 812, Pasteurella spp. | 813, Pediococcus acidilactici | 814, Pediococcus pentosaceus | 815, Pediococcus spp. | 816, Penicillium chrysogenum | 817, Penicillium spp. | 818, Peptococcus niger | 819, Peptococcus spp. | 820, Peptostreptococcus anaerobius | 821, Peptostreptococcus asaccharolyticus | 822, Peptostreptococcus hydrogenalis | 823, Peptostreptococcus indolicus | 824, Peptostreptococcus lacrimalis | 825, Peptostreptococcus lactolyticus | 826, Peptostreptococcus magnus | 827, Peptostreptococcus parvulus | 828, Peptostreptococcus prevotii | 829, Peptostreptococcus productus | 830, Peptostreptococcus tetradius | 831, Peptostreptococcus vaginalis | 832, Peptostreptococcus spp. | 833, Phaeococcomyces exophialae | 834, Phaeococcomyces spp. | 835, Phialemoniopsis pluiroculosa | 836, Phialemoniopsis spp. | 837, Photobacterium damselae subsp damselae | 838, Photobacterium spp. | 839, Pichia anomala | 840, Pichia farinosa | 841, Pichia ohmeri | 842, Pichia polymorpha | 843, Pichia spp. | 844, Plasmodium falciparum | 845, Plasmodium malariae | 846, Plasmodium ovale | 847, Plasmodium vivax | 848, Plasmodium spp. | 849, Poliovirus | 850, Porphyromonas asaccharolytica | 851, Porphyromonas endodontalis | 852, Porphyromonas gingivalis | 853, Porphyromonas levii | 854, Porphyromonas salivosa | 855, Porphyromonas spp. | 856, Poxviridae molluscum contagiosum | 857, Poxviridae Orthopoxvirus | 858, Poxviridae spp. | 859, Pragia fontium | 860, Pragia spp. | 861, Prevotella bivia | 862, Prevotella buccae | 863, Prevotella buccalis | 864, Prevotella corporis | 865, Prevotella dentalis | 866, Prevotella denticola | 867, Prevotella disiens | 868, Prevotella heparinolytica | 869, Prevotella intermedia | 870, Prevotella loescheii | 871, Prevotella melaninogenica | 872, Prevotella nigrescens | 873, Prevotella oralis | 874, Prevotella oris | 875, Prevotella oulorum | 876, Prevotella ruminicola | 877, Prevotella veroralis | 878, Prevotella zoogleoformans | 879, Prevotella spp. | 880, Prion | 881, Propionibacterium acnes | 882, Propionibacterium avidum | 883, Propionibacterium granulosum | 884, Propionibacterium lymphophilum | 885, Propionibacterium propionicum | 886, Propionibacterium spp. | 887, Proteus hauseri | 888, Proteus mirabilis | 889, Proteus myxofaciens | 890, Proteus penneri | 891, Proteus vulgaris | 892, Proteus spp. | 893, Prototheca wickerhamii | 894, Prototheca zopfii | 895, Prototheca spp. | 896, Providencia alcalifaciens | 897, Providencia heimbachae | 898, Providencia rettgeri | 899, Providencia rustigianii | 900, Providencia stuartii | 901, Providencia spp. | 902, Pseudallescheria boydii | 903, Pseudallescheria spp. | 904, Pseudomonas aeruginosa | 905, Pseudomonas alcaligenes | 906, Pseudomonas chlororaphis | 907, Pseudomonas delafieldii | 908, Pseudomonas diminuta | 909, Pseudomonas fluorescens | 910, Pseudomonas mendocina | 911, Pseudomonas oryzihabitans | 912, Pseudomonas otitidis | 913, Pseudomonas pertucigena | 914, Pseudomonas pickettii | 915, Pseudomonas proteolytica | 916, Pseudomonas pseudoalcaligenes | 917, Pseudomonas putida | 918, Pseudomonas sp. group 1 | 919, Pseudomonas stutzeri | 920, Pseudomonas thomasii | 921, Pseudomonas vesicularis | 922, Pseudomonas-like group 2 | 923, Pseudomonas spp. | 924, Pseudoramibacter alactolyticus | 925, Pseudoramibacter spp. | 926, Psychrobacter immobilis | 927, Psychrobacter spp. | 928, Purpureocillium lilacinum | 929, Purpureocillium spp. | 930, Rabies Lyssavirus | 931, Lyssavirus spp. | 932, Rahnella aquatilis | 933, Rahnella spp. | 934, Ralstonia insidiosa | 935, Ralstonia mannitolilytica | 936, Ralstonia paucula | 937, Ralstonia pickettii | 938, Ralstonia spp. | 939, Raoultella ornithinolytica | 940, Raoultella planticola | 941, Raoultella terrigena | 942, Raoultella spp. | 943, Reovirus reovirus, types 1 2 | 944, Reovirus spp. | 945, Respiratory syncytial virus | 946, Orthopneumovirus spp. | 947, Rhinovirus | 948, Rhizobium radiobacter | 949, Rhizopus oligosporus | 950, Rhizopus spp. | 951, Rhodococcus equi | 952, Rhodococcus spp. | 953, Rhodotorula glutinis | 954, Rhodotorula minuta | 955, Rhodotorula pilimanae | 956, Rhodotorula rubra | 957, Rhodotorula spp. | 958, Rickettsia akari | 959, Rickettsia conorii | 960, Rickettsia prowazeki | 961, Rickettsia rickettsii | 962, Rickettsia tsutsugamushi | 963, Rickettsia typhi | 964, Rickettsia spp. | 965, Rochalimaea henselae | 966, Rochalimaea quintana | 967, Rochalimaea vinsonii | 968, Rochalimaea spp. | 969, Roseomonas gilardii | 970, Roseomonas mucosa | 971, Roseomonas spp. | 972, Rothia dentocariosa | 973, Rothia mucilaginosa | 974, Rothia spp. | 975, Ruminococcus hansenii | 976, Ruminococcus productus | 977, Ruminococcus spp. | 978, Saccharomyces cerevisiae | 979, Saccharomyces spp. | 980, Salmonella agbeni | 981, Salmonella agona | 982, Salmonella arizonae | 983, Salmonella braenderup | 984, Salmonella choleraesuis | 985, Salmonella corvallis | 986, Salmonella dublin | 987, Salmonella enterica | 988, Salmonella enteritidis | 989, Salmonella group A | 990, Salmonella group B | 991, Salmonella group C1 | 992, Salmonella group C2 | 993, Salmonella group D | 994, Salmonella group E | 995, Salmonella heidelberg | 996, Salmonella infantis | 997, Salmonella meleagridis | 998, Salmonella montevideo | 999, Salmonella newport | 1000, Salmonella oranienburg | 1001, Salmonella panama | 1002, Salmonella paratyphi A | 1003, Salmonella paratyphi B | 1004, Salmonella paratyphi C | 1005, Salmonella poona | 1006, Salmonella rissen | 1007, Salmonella saint-paul | 1008, Salmonella subgroup 2, subgenus II | 1009, Salmonella subgroup 3a, Arizona-monopha | 1010, Salmonella subgroup 3b, Arizona-diphasi | 1011, Salmonella subgroup 4, subgenus IV | 1012, Salmonella subgroup 5, subgenus V | 1013, Salmonella typhi | 1014, Salmonella typhimurium | 1015, Salmonella spp. | 1016, Sarcinosporon inkin | 1017, Sarcinosporon spp. | 1018, Sarcoptes scabiei (scabies) | 1019, Sarcoptes spp. | 1020, Scedosporium spp. | 1021, Scedosporium spp. | 1022, Selenomonas artemidis | 1023, Selenomonas dianae | 1024, Selenomonas flueggei | 1025, Selenomonas infelix | 1026, Selenomonas noxia | 1027, Selenomonas sputigena | 1028, Selenomonas spp. | 1029, Serpulina jonesii | 1030, Serpulina spp. | 1031, Serratia entomophila | 1032, Serratia ficaria | 1033, Serratia fonticola | 1034, Serratia grimesii | 1035, Serratia liquefaciens | 1036, Serratia marcescens | 1037, Serratia odorifera | 1038, Serratia plymuthica | 1039, Serratia proteamaculans | 1040, Serratia rubidaea | 1041, Serratia spp. | 1042, Shewanella putrefaciens | 1043, Shewanella spp. | 1044, Shigella Group A | 1045, Shigella Group B | 1046, Shigella Group C | 1047, Shigella Group D | 1048, Shigella spp. | 1049, Sphingobacterium mizutii | 1050, Sphingobacterium multivorum | 1051, Sphingobacterium spiritivorum | 1052, Sphingobacterium thalpophylum | 1053, Sphingobacterium yabuuchiae | 1054, Sphingobacterium spp. | 1055, Sphingomonas mucosissima | 1056, Sphingomonas paucimobilis | 1057, Sphingomonas spp. | 1058, Spirillum minus | 1059, Spirillum spp. | 1060, Sporobolomyces salmonicolor | 1061, Sporobolomyces spp. | 1062, Sporothrix schenckii | 1063, Sporothrix spp. | 1064, Staphylococcus arlettae | 1065, Staphylococcus aureus | 1066, Staphylococcus capitis | 1067, Staphylococcus caprae | 1068, Staphylococcus carnosus | 1069, Staphylococcus chromogenes | 1070, Staphylococcus coagulans | 1071, Staphylococcus coagulase positive | 1072, Staphylococcus cohnii | 1073, Staphylococcus epidermidis | 1074, Staphylococcus equorum | 1075, Staphylococcus hominis | 1076, Staphylococcus hyicus | 1077, Staphylococcus intermedius | 1078, Staphylococcus kloosii | 1079, Staphylococcus schleiferi | 1080, Staphylococcus spp. | 1081, Stenotrophomonas maltophilia | 1082, Stenotrophomonas spp. | 1083, Stomatococcus mucilaginosus | 1084, Stomatococcus spp. | 1085, Streptobacillus moniliformis | 1086, Streptobacillus spp. | 1087, Streptococcus acidominimus | 1088, Streptococcus adjacens | 1089, Streptococcus agalactiae | 1090, Streptococcus alpha-hemolytic | 1091, Streptococcus anginosus | 1092, Streptococcus anginosus group | 1093, Streptococcus beta-hemolytic | 1094, Streptococcus bovis | 1095, Streptococcus constellatus | 1096, Streptococcus crista | 1097, Streptococcus D unspecified, non-entero | 1098, Streptococcus defectivus | 1099, Streptococcus dysgalactiae | 1100, Streptococcus equi | 1101, Streptococcus equinus | 1102, Streptococcus gamma-hemolytic | 1103, Streptococcus gordonii | 1104, Streptococcus group C | 1105, Streptococcus group E | 1106, Streptococcus group F | 1107, Streptococcus group G | 1108, Streptococcus hansenii | 1109, Streptococcus iniae | 1110, Streptococcus intermedius | 1111, Streptococcus mitis | 1112, Streptococcus mitis group | 1113, Streptococcus mutans | 1114, Streptococcus oralis | 1115, Streptococcus parasanguis | 1116, Streptococcus pleomorphus, anaerobic | 1117, Streptococcus pneumoniae | 1118, Streptococcus pyogenes | 1119, Streptococcus salivarius | 1120, Streptococcus sanguis | 1121, Streptococcus sanguis II | 1122, Streptococcus sobrinus | 1123, Streptococcus uberis | 1124, Streptococcus vestibularis | 1125, Streptococcus viridans spp. | 1126, Streptococcus alpha non hemolytic | 1127, Streptococcus non-group A non-group B, beta-hemolytic | 1128, Streptococcus spp. | 1129, Suttonella indologenes | 1130, Suttonella spp. | 1131, Tatlockia macaechernii | 1132, Tatlockia micdadei | 1133, Tatlockia spp. | 1134, Tatumella ptyseos | 1135, Tatumella spp. | 1136, Tissierella praeacuta | 1137, Tissierella spp. | 1138, Togavirus dengue | 1139, Togavirus Eastern equine encephalitis | 1140, Togavirus tick-borne encephalitis | 1141, Togavirus spp. | 1142, Trichosporon asahii | 1143, Trichosporon beigelii | 1144, Trichosporon mucoides | 1145, Trichosporon pullulans | 1146, Trichosporon spp. | 1147, Trypanosoma brucei | 1148, Trypanosoma cruzi | 1149, Trypanosoma Trypan-Afr | 1150, Trypanosoma Trypan-Chag | 1151, Trypanosoma spp. | 1152, Tsukamurella pulmonis | 1153, Tsukamurella spp. | 1154, Ureaplasma urealyticum | 1155, Ureaplasma spp. | 1156, Varicella-zoster virus | 1157, Varicellovirus spp. | 1158, Veillonella parvula | 1159, Veillonella spp. | 1160, Vermamoeba vermiformis | 1161, Hartmannella spp. | 1162, Vibrio alginolyticus | 1163, Vibrio cholerae | 1164, Vibrio cincinnatiensis | 1165, Vibrio damsela | 1166, Vibrio fluvialis | 1167, Vibrio furnissii | 1168, Vibrio harveyi | 1169, Vibrio hollisae | 1170, Vibrio metschnikovii | 1171, Vibrio mimicus | 1172, Vibrio parahaemolyticus | 1173, Vibrio vulnificus | 1174, Vibrio spp. | 1175, Virgibacillus pantothenticus | 1176, Virgibacillus spp. | 1177, Weeksella virosa | 1178, Weeksella zoohelcum | 1179, Weeksella spp. | 1180, Wolinella succinogenes | 1181, Wolinella spp. | 1182, Xenorhabdus luminescens | 1183, Xenorhabdus nematophilus | 1184, Xenorhabdus spp. | 1185, Yersinia aldovae | 1186, Yersinia bercovieri | 1187, Yersinia enterocolitica | 1188, Yersinia frederiksenii | 1189, Yersinia intermedia | 1190, Yersinia kristensenii | 1191, Yersinia mollaretii | 1192, Yersinia pestis | 1193, Yersinia pseudotuberculosis | 1194, Yersinia rohdei | 1195, Yersinia ruckeri | 1196, Yersinia spp. | 1197, Yokenella regensburgei (Koserella trabulsii) | 1198, Yokenella spp. (Koserella spp.) | 1199, Zika virus | 1200, Flavivirus spp.",,autocomplete,,,,[another_pathogen_yesno_3]=1,,,,,,
type_of_positive_test_3,hai_standardized_variable_list_outbreak_only,,checkbox,"Pathogen 3: Type of positive test(s)","1, PCR | 2, Cultures | 3, Antigen | 4, Titers | 5, Microscopy","Check all that apply.",,,,,[another_pathogen_yesno_3]=1,,,,,,
number_of_positive_tests_3,hai_standardized_variable_list_outbreak_only,,text,"Pathogen 3: Total number of positive tests",,"Indicate the number of positive tests for each test type reported.",,,,,[another_pathogen_yesno_3]=1,,,,,,
path_positive_test_notes_3,hai_standardized_variable_list_outbreak_only,,text,"Pathogen 3: Positive test notes",,"Include additional information if applicable (e.g., the exact number of tests per test type).",,,,,[another_pathogen_yesno_3]=1,,,,,,
confirmed_case_definition,hai_standardized_variable_list_outbreak_only,,text,"Confirmed case definition",,,,,,,,,,,,,
numbed_of_confirmed_cases,hai_standardized_variable_list_outbreak_only,,text,"Number of confirmed cases",,,integer,,,,,,,,,,
probable_case_definition,hai_standardized_variable_list_outbreak_only,,text,"Probable case definition",,,,,,,,,,,,,
number_of_probable_cases,hai_standardized_variable_list_outbreak_only,,text,"Number of probable cases",,,integer,,,,,,,,,,
suspect_case_definition,hai_standardized_variable_list_outbreak_only,,text,"Suspect case definition",,,,,,,,,,,,,
number_of_suspect_cases,hai_standardized_variable_list_outbreak_only,,text,"Number of suspect cases",,,integer,,,,,,,,,,
facility_description,hai_standardized_variable_list_outbreak_only,"
Facility-level Information
",descriptive,"The following variables capture data at the facility level and are specific for use by public health, such as local and state public health departments, to compare characteristics across facilities within their jurisdiction.
",,,,,,,,,,,,,
method_of_report,hai_standardized_variable_list_outbreak_only,,dropdown,"Method of report","1, Surveillance report | 2, Clinical consultation | 3, Direct facility inquiry to state HD | 4, Other",,,,,,,,,,,,
specify_other_method_rep,hai_standardized_variable_list_outbreak_only,,text,"Specify other method of report",,,,,,,[method_of_report]=4,,,,,,
type_of_surveillance_rep,hai_standardized_variable_list_outbreak_only,,dropdown,"Type of surveillance report","1, Electronic lab reporting | 2, Electronic case reporting",,,,,,[method_of_report]=1,,,,,,
source_of_report,hai_standardized_variable_list_outbreak_only,,dropdown,"Source of report","1, CDC lab | 2, Facility | 3, Local health department | 4, Local lab | 5, State health department | 6, State lab | 7, Other",,,,,,,,,,,,
specify_other_source_rep,hai_standardized_variable_list_outbreak_only,,text,"Specify other source of report",,,,,,,[source_of_report]=6,,,,,,
number_of_facilities_invol,hai_standardized_variable_list_outbreak_only,,text,"Number of facilities involved",,,integer,,,,,,,,,,
facility_healthcare_settin,hai_standardized_variable_list_outbreak_only,,dropdown,"Facility healthcare setting","1, Acute care hospital | 2, Ambulatory surgical center | 3, Dental | 4, Dialysis center | 5, Inpatient rehabilitation facility | 6, Home health | 7, Long term acute care hospital | 8, Assisted living residence | 9, Outpatient clinic | 10, Nursing home/Skilled nursing facility | 11, Urgent care | 12, Other","If a single LTCF provides multiple levels of care (e.g. assisted living and skilled nursing), regard these as separate facilities and complete the form for the part of the facility where the outbreak is occurring. ",,,,,,,,,,,
specify_other_hc_facility,hai_standardized_variable_list_outbreak_only,,text,"Specify other healthcare facility",,,,,,,[facility_healthcare_settin]=12,,,,,,
the_patient_level_descript,hai_standardized_variable_list_outbreak_only,"
Patient-level information
",descriptive,"The following variables capture data at the patient level that can be collected during an outbreak.
",,,,,,,,,,,,,
date_redcap_pt,hai_standardized_variable_list_outbreak_only,,text,"Date of entry into Redcap",,,date_mdy,,,,,,,,,,
name_person_rep_pt,hai_standardized_variable_list_outbreak_only,,text,"Name of person entering report",,,,,,,,,,,,,
email_person_rep,hai_standardized_variable_list_outbreak_only,,text,"Email of person entering report",,,,,,,,,,,,,
date_of_report,hai_standardized_variable_list_outbreak_only,,text,"Date of report",,"Date of pdf export/abstraction/patient interview.",date_mdy,,,,,,,,,,
patient_identifier,hai_standardized_variable_list_outbreak_only,,text,"Patient identifier",,,,,,,,,,,,,
date_of_birth,hai_standardized_variable_list_outbreak_only,,text,"Date of Birth",,,date_mdy,,,,,,,,,,
age,hai_standardized_variable_list_outbreak_only,,text,"Age (Years)",,"If < 1 year of age, enter 0.",,,,,,,,,,,
age_how_many_months,hai_standardized_variable_list_outbreak_only,,text,"How many months?",,,,,,,[age]<1,,,,,,
pt_sex,hai_standardized_variable_list_outbreak_only,,radio,Sex,"1, Male | 2, Female | 3, Don't know | 4, Refused","Sex as assigned at birth or original birth certificate",,,,,,,,,,,
hai_case_status,hai_standardized_variable_list_outbreak_only,,radio,"Case status","1, Confirmed | 2, Probable | 3, Suspect/Possible | 4, Contact | 5, Other",,,,,,,,,,,,
specify_other_case_status,hai_standardized_variable_list_outbreak_only,,text,"Specify other case status",,,,,,,[hai_case_status]=5,,,,,,
hai_role,hai_standardized_variable_list_outbreak_only,,radio,Role,"1, Patient | 2, Resident | 3, Staff | 4, Visitor | 5, Other",,,,,,,,,,,,
specify_other_role,hai_standardized_variable_list_outbreak_only,,text,"Specify other role",,,,,,,[hai_role]=5,,,,,,
date_of_illness_onset,hai_standardized_variable_list_outbreak_only,,text,"Date of illness onset",,,date_mdy,,,,,,,,,,
outpatient_yesno,hai_standardized_variable_list_outbreak_only,,yesno,"Outpatient medical care related to this illness/diagnosis?",,"This includes all relevant outpatient visits during the potential exposure period (list name and address of outpatient medical facility, MRN, outpatient visit dates).",,,,,,,,,,,
outpatient_medical_care,hai_standardized_variable_list_outbreak_only,,text,"Outpatient medical care",,,,,,,[outpatient_yesno]=1,,,,,,
inpatient_yesno,hai_standardized_variable_list_outbreak_only,,yesno,"Inpatient medical care related to this illness/diagnosis?",,"This includes all relevant inpatient visits during the potential exposure period (list name and address of inpatient medical facility, MRN, inpatient visit dates, ED arrival date).",,,,,,,,,,,
inpatient_medical_care,hai_standardized_variable_list_outbreak_only,,text,"Inpatient medical care",,,,,,,[inpatient_yesno]=1,,,,,,
pt_admit_hosp_yesno,hai_standardized_variable_list_outbreak_only,,yesno,"Was the patient admitted to a hospital?",,,,,,,,,,,,,
hospital_admission_info,hai_standardized_variable_list_outbreak_only,,text,"Hospital admission information",,"List all room numbers with units and the dates that the patient occupied each room during the exposure period of interest.",,,,,[pt_admit_hosp_yesno]=1,,,,,,
pt_outcome,hai_standardized_variable_list_outbreak_only,,radio,"Outcome/Current disposition","1, Alive | 2, Deceased | 3, Unknown",,,,,,,,,,,,
outcome_current_dispositio,hai_standardized_variable_list_outbreak_only,,text,"Outcome/Current disposition notes",,"Indicate if the patient is hospitalized, home, at another care facility, recovered, unknown, etc.",,,,,[pt_outcome]=1,,,,,,
pt_date_of_death,hai_standardized_variable_list_outbreak_only,,text,"Date of death",,,date_mdy,,,,[pt_outcome]=2,,,,,,
pt_cause_of_death,hai_standardized_variable_list_outbreak_only,,text,"Cause of death",,,,,,,[pt_outcome]=2,,,,,,
pt_autopsy_performed,hai_standardized_variable_list_outbreak_only,,yesno,"Autopsy performed?",,,,,,,[pt_outcome]=2,,,,,,
pt_autopsy_date,hai_standardized_variable_list_outbreak_only,,text,"Autopsy date",,,date_mdy,,,,[pt_autopsy_performed]=1,,,,,,
pt_autopsy_findings,hai_standardized_variable_list_outbreak_only,,text,"Autopsy findings",,,,,,,[pt_autopsy_performed]=1,,,,,,
comorbidities_past_medical,hai_standardized_variable_list_outbreak_only,,checkbox,"Comorbidities/Past Medical History","1, Cerebrovascular disease | 2, Chronic kidney disease | 3, Chronic lung disease | 4, Congestive heart failure | 5, Coronary artery disease | 6, Diabetes | 7, Gastrointestinal disease/bleeding | 8, HIV/AIDS | 9, Hypertension | 10, Liver disease/cirrhosis | 11, Major trauma | 12, Malignancy | 13, Obesity | 14, Peripheral vascular disease | 15, Previous surgery | 16, Substance abuse | 17, Other","Check all that apply.",,,,,,,,,,,
specify_other_comorbiditie,hai_standardized_variable_list_outbreak_only,,text,"Specify other comorbidities/Past medical history",,"Common/relevant comorbidities/substance abuse, other",,,,,,,,,,,
exposures,hai_standardized_variable_list_outbreak_only,,checkbox,Exposures,"1, Indwelling devices | 2, Injections | 3, Locations | 4, Medical products | 5, Medications | 6, Procedures | 7, Surgeries | 8, Transplanted Organs, Tissue Cells, or Blood products | 9, Water","Check all that apply. Facilities can tailor based on infection/organism.",,,,,,,,,,,
exposures_notes,hai_standardized_variable_list_outbreak_only,,text,"Exposures: notes",,"Include specific details about exposures relevant to the investigation.",,,,,,,,,,,
hai_clinical_symptoms,hai_standardized_variable_list_outbreak_only,,checkbox,"Signs and symptoms (within 48 hours of illness onset)","1, Abdominal pain | 2, Abscess | 3, Altered mental status | 4, Bloating | 5, Cellulitis | 6, Chills | 7, Constipation | 8, Diarrhea | 9, Dyspnea (i.e., difficulty breathing) | 10, Dysuria | 11, Furuncle (i.e., skin boil) | 12, Hematochezia (i.e., red blood in stool) | 13, Hemoptysis (i.e., coughing up blood) | 14, Loss of appetite | 15, Melena (i.e., black, tarry stool) | 16, Nausea/vomiting | 17, New increased sputum | 18, New onset cough | 19, Rales/crackles | 20, Rash | 21, Rhinorrhea (i.e., runny nose) | 22, Sore throat | 23, Suprapubic tenderness | 24, Urinary urgency | 25, Weight loss | 26, Wheezing | 27, Worsening gas exchange (e.g., increase O2, PEEP, TV) | 28, Wound","Check all that apply.",,,,,,,,,,,
infect_type,hai_standardized_variable_list_outbreak_only,,checkbox,"Infection type(s)","1, Abscess | 2, Blood | 3, Respiratory | 4, Surgical/wound | 5, Urinary tract | 6, Joint | 7, Other","Check all that apply.",,,,,,,,,,,
specify_other_infect_type,hai_standardized_variable_list_outbreak_only,,text,"Specify other infection type(s)",,,,,,,,,,,,,
site_of_infection,hai_standardized_variable_list_outbreak_only,,text,"Site of infection",,,,,,,,,,,,,
diagnostic_test_yesno,hai_standardized_variable_list_outbreak_only,,yesno,"Diagnostic test performed?",,,,,,,,,,,,,
diagnostic_test,hai_standardized_variable_list_outbreak_only,,checkbox,"Pathogen 1: Diagnostic test(s) performed","1, PCR | 2, Serology | 3, Antigen test | 4, Culture","Check all that apply.",,,,,[diagnostic_test_yesno]=1,,,,,,
diagnostic_test_result,hai_standardized_variable_list_outbreak_only,,text," Pathogen 1: Diagnostic test result ",,,,,,,[diagnostic_test_yesno]=1,,,,,,
date_collected,hai_standardized_variable_list_outbreak_only,,text,"Pathogen 1: Date specimen collected",,,date_mdy,,,,[diagnostic_test_yesno]=1,,,,,,
specimen_source,hai_standardized_variable_list_outbreak_only,,checkbox,"Pathogen 1: Specimen source","1, Blood | 2, Cerebrospinal fluid | 3, Joint/synovial fluid | 4, Urine | 5, Wound | 6, Sputum | 7, Skin abscess | 8, Stool | 9, Other","Check all that apply.",,,,,[diagnostic_test_yesno]=1,,,,,,
specify_other_spec_source,hai_standardized_variable_list_outbreak_only,,text,"Pathogen 1: Specify other specimen source",,,,,,,[diagnostic_test_yesno]=1,,,,,,
specimen_source_body_site,hai_standardized_variable_list_outbreak_only,,text,"Pathogen 1: Where was the specimen obtained? (If applicable)",,,,,,,[diagnostic_test_yesno]=1,,,,,," @PLACEHOLDER='Specify body site'"
reason_spec_collection,hai_standardized_variable_list_outbreak_only,,text,"Pathogen 1: Reason for specimen collection",,,,,,,[diagnostic_test_yesno]=1,,,,,,
diagnostic_test_yesno_2,hai_standardized_variable_list_outbreak_only,,yesno,"Another Diagnostic test performed?",,,,,,,[diagnostic_test_yesno]=1,,,,,,
diagnostic_test_2,hai_standardized_variable_list_outbreak_only,,checkbox,"Pathogen 2: Diagnostic test(s) performed","1, PCR | 2, Serology | 3, Antigen test | 4, Culture","Check all that apply.",,,,,[diagnostic_test_yesno_2]=1,,,,,,
diagnostic_test_result_2,hai_standardized_variable_list_outbreak_only,,text,"Pathogen 2: Diagnostic test result",,,,,,,[diagnostic_test_yesno_2]=1,,,,,,
date_collected_2,hai_standardized_variable_list_outbreak_only,,text,"Pathogen 2: Date specimen collected",,,date_mdy,,,,[diagnostic_test_yesno_2]=1,,,,,,
specimen_source_2,hai_standardized_variable_list_outbreak_only,,checkbox,"Pathogen 2: Specimen source","1, Body fluid | 2, Body location | 3, Indwelling catheters | 4, Other","Check all that apply.",,,,,[diagnostic_test_yesno_2]=1,,,,,,
specify_other_spec_source_2,hai_standardized_variable_list_outbreak_only,,text,"Pathogen 2: Specify other specimen source",,,,,,,[diagnostic_test_yesno_2]=1,,,,,,
specimen_source_body_site_2,hai_standardized_variable_list_outbreak_only,,text,"Pathogen 2: Where was the specimen obtained? (If applicable)",,,,,,,[diagnostic_test_yesno_2]=1,,,,,," @PLACEHOLDER='Specify body site'"
reason_spec_collection_2,hai_standardized_variable_list_outbreak_only,,text,"Pathogen 2: Reason for specimen collection",,,,,,,[diagnostic_test_yesno_2]=1,,,,,,
diagnostic_test_yesno_3,hai_standardized_variable_list_outbreak_only,,yesno,"Another Diagnostic test performed?",,,,,,,[diagnostic_test_yesno_2]=1,,,,,,
diagnostic_test_3,hai_standardized_variable_list_outbreak_only,,checkbox,"Pathogen 3: Diagnostic test(s) performed","1, PCR | 2, Serology | 3, Antigen test | 4, Culture","Check all that apply.",,,,,[diagnostic_test_yesno_3]=1,,,,,,
diagnostic_test_result_3,hai_standardized_variable_list_outbreak_only,,text,"Pathogen 3: Diagnostic test result",,,,,,,[diagnostic_test_yesno_3]=1,,,,,,
date_collected_3,hai_standardized_variable_list_outbreak_only,,text,"Pathogen 3: Date specimen collected",,,date_mdy,,,,[diagnostic_test_yesno_3]=1,,,,,,
specimen_source_3,hai_standardized_variable_list_outbreak_only,,checkbox,"Pathogen 3: Specimen source","1, Body fluid | 2, Body location | 3, Indwelling catheters | 4, Other","Check all that apply.",,,,,[diagnostic_test_yesno_3]=1,,,,,,
specify_other_spec_source_3,hai_standardized_variable_list_outbreak_only,,text,"Pathogen 3: Specify other specimen source",,,,,,,[diagnostic_test_yesno_3]=1,,,,,,
specimen_source_body_site_3,hai_standardized_variable_list_outbreak_only,,text,"Pathogen 3: Where was the specimen obtained? (If applicable)",,,,,,,[diagnostic_test_yesno_3]=1,,,,,," @PLACEHOLDER='Specify body site'"
reason_spec_collection_3,hai_standardized_variable_list_outbreak_only,,text,"Pathogen 3: Reason for specimen collection",,,,,,,[diagnostic_test_yesno_3]=1,,,,,,
non_surg_procedures_yesno,hai_standardized_variable_list_outbreak_only,,yesno,"Non-surgical procedures?",,"These include joint injections, simple biopsies, point of care testing, infusions, etc. Include any procedures occurring during the exposure period of interest.",,,,,,,,,,,
non_surg_procedures_desc,hai_standardized_variable_list_outbreak_only,,text,"Non-surgical procedures description",,,,,,,[non_surg_procedures_yesno]=1,,,,,," @PLACEHOLDER='Specify procedure, date, and location'"
surgical_procedures_yesno,hai_standardized_variable_list_outbreak_only,,yesno,"Surgical procedures",,"Include any surgeries occurring during the exposure period of interest.",,,,,,,,,,,
surgical_procedures_descri,hai_standardized_variable_list_outbreak_only,,text,"Surgical procedures description",,,,,,,[surgical_procedures_yesno]=1,,,,,," @PLACEHOLDER='Specify procedure, date, and location'"
treatment_type,hai_standardized_variable_list_outbreak_only,,checkbox,"Type of treatment","1, Antimicrobials | 2, Antifungals | 3, Antivirals | 4, Surgery | 5, Other","Check all that apply.",,,,,,,,,,,
specify_other_treatment,hai_standardized_variable_list_outbreak_only,,text,"Specify other treatment",,,,,,,,,,,,,
treatment_description,hai_standardized_variable_list_outbreak_only,,text,"Treatment description",,,,,,,,,,,,," @PLACEHOLDER='Specify medication, dose, route (if needed)'"
facility_description_v2,hai_standardized_variable_list_health_equity,"",descriptive,"The following variables capture data at the facility level and are specific for use by public health, such as local and state public health departments, to compare characteristics across facilities within their jurisdiction. A number of these variables can be determined retrospectively, if needed, by using the facility address (e.g., jurisdiction, county, etc.) or Medicare Provider Number.
",,,,,,,,,,,,,
date_redcap_fac_he_v2,hai_standardized_variable_list_health_equity,,text,"Date of entry into Redcap",,,date_mdy,,,,,,,,,,
name_person_rep_fac_he_v2,hai_standardized_variable_list_health_equity,,text,"Name of person entering report",,,,,,,,,,,,,
facility_name_he,hai_standardized_variable_list_health_equity,,text,"Facility Name",,,,,,,,,,,,,
facility_bed_count_he,hai_standardized_variable_list_health_equity,,text,"Facility bed count (if applicable)",,,integer,,,,,,,,,,
facility_streetname_he,hai_standardized_variable_list_health_equity,,text,"Facility Street name",,,,,,,,,,,,,
telephone_number_he,hai_standardized_variable_list_health_equity,,text,"Telephone number ",,,phone,,,,,,,,,," @PLACEHOLDER='XXX-XXX-XXXX'"
facility_city_he,hai_standardized_variable_list_health_equity,,text,"Facility City",,,,,,,,,,,,,
facility_state_he,hai_standardized_variable_list_health_equity,,text,"Facility State",,,,,,,,,,,,,
facility_zip_code_he,hai_standardized_variable_list_health_equity,,text,"Facility Zip code",,,zipcode,,,,,,,,,,
facility_county_he,hai_standardized_variable_list_health_equity,,text,"Facility County",,,,,,,,,,,,,
irs_tax_exempt_status_he,hai_standardized_variable_list_health_equity,,radio,"IRS tax exemption status","1, For-profit | 2, Non-profit | 3, Unknown",,,,,,,,,,,,
after_resolution_he,hai_standardized_variable_list_health_equity,,descriptive,"The variables below can be determined after the resolution of the outbreak using the facility's county and state address information
",,,,,,,,,,,,,
urbanicity_he,hai_standardized_variable_list_health_equity,,radio,Urbanicity,"1, Urban Area | 2, Urban Cluster | 3, Rural",,,,,,,,,,,,
federally_qual_health_he,hai_standardized_variable_list_health_equity,,radio,"Federally Qualified Health Center (FQHC)","1, Yes | 2, No | 3, Unknown",,,,,,,,,,,,
med_underseved_area_he,hai_standardized_variable_list_health_equity,,radio,"Medically Underserved Area (MUA)","1, Yes | 2, No | 3, Unknown",,,,,,,,,,,,
health_prof_shorta_he,hai_standardized_variable_list_health_equity,,radio,"Health Professional Shortage Area (HPSA)","1, Yes | 2, No | 3, Unknown",,,,,,,,,,,,
after_resolution_2_he,hai_standardized_variable_list_health_equity,,descriptive,"The variables below related to patient pay can be determined after the resolution of the outbreak and may be obtained directly from healthcare facilities. Patient pay categories are not mutually exclusive.
",,,,,,,,,,,,,
medicare_medicaid_prov_he,hai_standardized_variable_list_health_equity,,text,"Medicare/Medicaid Provider Number (MPN)",,,,,,,,,,,,,
percentage_medicare_he,hai_standardized_variable_list_health_equity,,text,"Percentage of patients on Medicare",,,,,,,,,,,,,
percentage_medicaid_he,hai_standardized_variable_list_health_equity,,text,"Percentage of patients on Medicaid",,,,,,,,,,,,,
percentage_cashpay_he,hai_standardized_variable_list_health_equity,,text,"Percentage of patients using cash pay",,,,,,,,,,,,,
percentage_priv_ins_he,hai_standardized_variable_list_health_equity,,text,"Percentage of patients using private insurance",,,,,,,,,,,,,
percentage_tricare_he,hai_standardized_variable_list_health_equity,,text,"Percentage of patients using Tricare/VA/military insurance",,,,,,,,,,,,,
percentage_tribal_he,hai_standardized_variable_list_health_equity,,text,"Percentage of patients using IHS/Tribal Health Services",,,,,,,,,,,,,
he_variable_statement_he,hai_standardized_variable_list_health_equity,"",descriptive,"The following variables capture health equity related data at the patient-level that can be obtained retrospectively and may be challenging to collect even after the resolution of an outbreak. If attempting to collect this health equity information, data may be collected from a number of different sources (e.g., electronic medical records, patient interviews or surveys, etc.). Therefore, the format of the questions should be tailored to the method of data collection selected.
",,,,,,,,,,,,,
date_redcap_pt_v2,hai_standardized_variable_list_health_equity,,text,"Date of entry into Redcap",,,date_mdy,,,,,,,,,,
name_person_rep_pt_v2,hai_standardized_variable_list_health_equity,,text,"Name of person entering report",,,,,,,,,,,,,
email_person_rep_v2,hai_standardized_variable_list_health_equity,,text,"Email of person entering report",,,,,,,,,,,,,
date_of_report_v2,hai_standardized_variable_list_health_equity,,text,"Date of report",,"Date of pdf export/abstraction/patient interview.",date_mdy,,,,,,,,,,
patient_identifier_v2,hai_standardized_variable_list_health_equity,,text,"Patient identifier",,,,,,,,,,,,,
pt_name_v2,hai_standardized_variable_list_health_equity,,text,"Patient name",,,,,,,,,,,,," @PLACEHOLDER='First and Last name'"
pt_gender_v2,hai_standardized_variable_list_health_equity,,checkbox,Gender,"1, Male | 2, Female | 3, Transgender | 4, Something else","Check all that apply. Gender as patient describes themselves.",,,,,,,,,,,
sexual_orientation_v2,hai_standardized_variable_list_health_equity,,radio,"Sexual orientation","1, Lesbian or Gay | Straight, that is not lesbian or gay | 2, Bisexual | 3, Something else | 4, I don't know the answer","Sexual orientation as patient describes themselves",,,,,,,,,,,
pt_race_v2,hai_standardized_variable_list_health_equity,,checkbox,Race,"1, White | 2, Black or African American | 3, American Indian or Alaska Native | 4, Asian | 5, Native Hawaiian or Other Pacific Islande | 6, Other | 7, Unknown | 8, Refused","Check all that apply.",,,,,,,,,,,
specify_other_race_v2,hai_standardized_variable_list_health_equity,,text,"Specify other Race",,,,,,,[race]=5,,,,,,
pt_ethnicity_v2,hai_standardized_variable_list_health_equity,,checkbox,Ethnicity,"1, Hispanic, Latino/a, or Spanish origin (not specified) | 2, Mexican, Mexican Am., Chicano | 3, Puerto Rican | 4, Cuban | 5, Another Hispanic, Latino/a, or Spanish origin | 6, Not of Hispanic, Latino/a, or Spanish origin","Check all that apply.",,,,,,,,,,,
state_or_federally_recogni_v2,hai_standardized_variable_list_health_equity,,text,"State or Federally recognized tribal enrollment",,"Examples include the following but not limited to: Navajo Nation, Blackfeet Tribe, Mayan, Aztec, Native Village of Barrow Inupiat Traditional Government, Nome Eskimo Community, etc.",,,,,,,,,,,
pt_insurance_v2,hai_standardized_variable_list_health_equity,,checkbox,Insurance,"1, Medicare | 2, Medicaid | 3, Private | 4, TRICARE/VA/Military | 5, Alaska Native/Indian Health Service/Tribal Health Services | 6, Other | 7, Unknown | 8, Refused","Check all that apply.",,,,,,,,,,,
specify_other_insurance_v2,hai_standardized_variable_list_health_equity,,text,"Specify other insurance",,,,,,,,,,,,,
industry_v2,hai_standardized_variable_list_health_equity,,text,Industry,,"Type of industry patient works in for job (e.g., Arts, Entertainment and Recreation, Administrative, Agriculture, Education, Finance and Insurance, Healthcare and Social Assistance, Information, Military, Public Administration, Professional, Scientific and Technical Services, etc.).",,,,,,,,,,,
occuption_v2,hai_standardized_variable_list_health_equity,,text,Occupation,,"Occupation that best describes patient's work",,,,,,,,,,,
household_income_last_year_v2,hai_standardized_variable_list_health_equity,,radio,"Household income last year, before taxes","1, <$20,000 | 2, $20,000 to $34,999 | 3, $35,000 to $49,999 | 4, $50,000 to $74,999 | 5, $75,000 to $99,999 | 6, $100,000 to $149,000 | 7, $150,000 to $199,999 | 8, $200,000 or more | 9, Unknown | 10, Refused",,,,,,,,,,,,
household_size_v2,hai_standardized_variable_list_health_equity,,text,"Indicate the total number of dependents in each age category living in household
Age categories:
0 to 5│ 6 to 12│ 12 to 17 │ 18 or older",,,,,,,,,,,,,
marital_status_v2,hai_standardized_variable_list_health_equity,,radio,"Marital status","1, Married or living with partner | 2, Widowed | 3, Divorced | 4, Separated | 5, Never married | 6, Unknown | 7, Refused",,,,,,,,,,,,
education_status_v2,hai_standardized_variable_list_health_equity,,radio,"Education status","1, Never attended school or only attended kindergarten | 2, Grades 1 through 8 (Elementary) | 3, Grades 9 through 11 (Some high school) | 4, Grade 12 or GED (High school graduate) | 5, College 1 year to 3 years (Some College or Technical school) | 6, College 4 years or more (College graduate) | 7, Unknown | 8, Refused",,,,,,,,,,,,
disability_part_a_v2,hai_standardized_variable_list_health_equity,,yesno,"Are you deaf, or do you have serious difficulty hearing? ",,,,,,,,,,,,,
disability_part_b_v2,hai_standardized_variable_list_health_equity,,yesno,"Are you deaf, or do you have serious difficulty hearing? ",,,,,,,,,,,,,
disability_part_c_v2,hai_standardized_variable_list_health_equity,,yesno,"Because of a physical, mental, or emotional condition, do you have serious difficulty concentrating, remembering, or making decisions? (5 years old or older)",,,,,,,,,,,,,
disability_part_d_v2,hai_standardized_variable_list_health_equity,,yesno,"Do you have serious difficulty walking or climbing stairs? (5 years old or older)",,,,,,,,,,,,,
disability_part_e_v2,hai_standardized_variable_list_health_equity,,yesno,"Do you have difficulty dressing or bathing? (5 years old or older)",,,,,,,,,,,,,
disability_part_f_v2,hai_standardized_variable_list_health_equity,,yesno,"Because of a physical, mental, or emotional condition, do you have difficulty doing errands alone such as visiting a doctor's office or shopping? (15 years old or older)""",,,,,,,,,,,,,
origin_v2,hai_standardized_variable_list_health_equity,,radio,Origin,"1, US born | 2, Foreign born | 3, Unknown | 4, Refused",,,,,,,,,,,,
origin_country_of_birth_v2,hai_standardized_variable_list_health_equity,,text,"Origin country of birth",,,,,,,[origin_v2]=2,,,,,,
primary_language_v2,hai_standardized_variable_list_health_equity,,radio,"Primary language","1, English | 2, Spanish | 3, Other | 4, Unknown | 5, Refused",,,,,,,,,,,,
specify_other_primary_lang_v2,hai_standardized_variable_list_health_equity,,text,"Specify other Primary language",,,,,,,[primary_language_v2]=3,,,,,,
primary_residence_v2,hai_standardized_variable_list_health_equity,,radio,"Primary residence","1, Home | 2, Multifamily housing (e.g., apartments, condominiums, townhouses, duplexes, quadruplexes) | 3, Long term acute care hospital (LTACH) | 4, Nursing home | 5, Rehabilitation Facility | 6, None/unhoused | 7, Jail | 8, Prison | 9, Other | 10, Unknown | 11, Refused","At the time of illness/hospitalization. If asymptomatic, enter housing when case status was assigned.",,,,,,,,,,,
specify_other_primary_resi_v2,hai_standardized_variable_list_health_equity,,text,"Specify other primary residence",,,,,,,[primary_residence_v2]=9,,,,,,
type_of_primary_residen_v2,hai_standardized_variable_list_health_equity,,radio,"Type of primary residence","1, Facility | 2, Home",,,,,,,,,,,,
primary_residence_diff,hai_standardized_variable_list_health_equity,,yesno,"Is the primary residence different than the facility identified at the beginning on the form? ",,,,,,,[type_of_primary_residen_v2]=1,,,,,,
facility_phone_v2,hai_standardized_variable_list_health_equity,,text,"Facility telephone number",,,phone,,,,[primary_residence_diff]=1,,,,,," @PLACEHOLDER='###-###-####'"
pt_facility_name_v2,hai_standardized_variable_list_health_equity,,text,"Facility name",,,,,,,[primary_residence_diff]=1,,,,,,
pt_home_streetname_v2,hai_standardized_variable_list_health_equity,,text,"Street name",,,,,,,[type_of_primary_residen_v2]=2,,,,,,
pt_home_city_v2,hai_standardized_variable_list_health_equity,,text,City,,,,,,,[type_of_primary_residen_v2]=2,,,,,,
pt_home_state_v2,hai_standardized_variable_list_health_equity,,text,State,,,,,,,[type_of_primary_residen_v2]=2,,,,,,
pt_home_zipcode_v2,hai_standardized_variable_list_health_equity,,text,Zipcode,,,zipcode,,,,[type_of_primary_residen_v2]=2,,,,,,
county_of_primary_residenc_v2,hai_standardized_variable_list_health_equity,,text,"County of primary residence",,,,,,,,,,,,,
urbanicity_of_primary_resi_v2,hai_standardized_variable_list_health_equity,,radio,"Urbanicity of primary residence","1, Urban area | 2, Urban cluster | 3, Rural",,,,,,,,,,,,
patient_telephone_number_v2,hai_standardized_variable_list_health_equity,,text,"Patient telephone number",,,phone,,,,,,,,,," @PLACEHOLDER='###-###-####'"